Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A3P25940 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A3P25940 AC073069.1-201ENST00000428657 441 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.79□□□□□ -1.8
COL5A3P25940 NIPA2P5-201ENST00000452282 464 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 DNAJC19P8-201ENST00000452887 259 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.79□□□□□ -1.8
COL5A3P25940 SETP12-201ENST00000514068 805 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 RNU1-41P-201ENST00000516161 162 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 RNU1-48P-201ENST00000516400 162 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 MIR2276-201ENST00000516886 89 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 AP001207.2-201ENST00000519490 539 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.79□□□□□ -1.8
COL5A3P25940 RPS4XP5-202ENST00000449995 1334 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
COL5A3P25940 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A3P25940 HSPA8P1-201ENST00000425843 1833 ntBASIC3.79□□□□□ -1.8
COL5A3P25940 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL5A3P25940 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL5A3P25940 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
COL5A3P25940 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL5A3P25940 MIR34A-201ENST00000385130 110 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 ARL5AP4-201ENST00000430731 512 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 HMGB3P11-201ENST00000440127 604 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.78□□□□□ -1.8
COL5A3P25940 METTL15P1-201ENST00000481421 1045 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.78□□□□□ -1.8
COL5A3P25940 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 AC083906.5-201ENST00000503722 328 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 AC109329.2-201ENST00000519658 482 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 RPL23AP92-201ENST00000603609 255 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A3P25940 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
COL5A3P25940 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A3P25940 AC063923.1-201ENST00000478982 1619 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL5A3P25940 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 AC087499.2-201ENST00000432861 149 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 SLC31A1P1-201ENST00000451221 567 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 RFPL4AP3-201ENST00000515267 345 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.78□□□□□ -1.8
COL5A3P25940 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC3.78□□□□□ -1.8
COL5A3P25940 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.78□□□□□ -1.8
COL5A3P25940 MTCO1P22-201ENST00000604619 1360 ntBASIC3.78□□□□□ -1.8
COL5A3P25940 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL5A3P25940 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL5A3P25940 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL5A3P25940 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
COL5A3P25940 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
COL5A3P25940 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
COL5A3P25940 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.77□□□□□ -1.81
COL5A3P25940 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL5A3P25940 BX679664.1-201ENST00000434429 253 ntBASIC3.77□□□□□ -1.81
COL5A3P25940 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.77□□□□□ -1.81
COL5A3P25940 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.77□□□□□ -1.81
COL5A3P25940 RN7SL20P-201ENST00000488827 297 ntBASIC3.77□□□□□ -1.81
COL5A3P25940 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.77□□□□□ -1.81
COL5A3P25940 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC3.77□□□□□ -1.81
COL5A3P25940 AC103783.1-201ENST00000520506 373 ntBASIC3.77□□□□□ -1.81
COL5A3P25940 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL5A3P25940 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.77□□□□□ -1.81
COL5A3P25940 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.77□□□□□ -1.81
COL5A3P25940 AL451049.1-201ENST00000608672 497 ntBASIC3.77□□□□□ -1.81
COL5A3P25940 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.77□□□□□ -1.81
COL5A3P25940 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL5A3P25940 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL5A3P25940 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.77□□□□□ -1.81
COL5A3P25940 AC107027.3-201ENST00000565095 3473 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 AC104446.1-201ENST00000613728 1321 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL5A3P25940 U3.42-201ENST00000408746 214 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 BTF3P9-201ENST00000418784 283 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 AL445528.1-201ENST00000426330 420 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.76□□□□□ -1.81
COL5A3P25940 RPL7P36-201ENST00000444633 681 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.76□□□□□ -1.81
COL5A3P25940 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.76□□□□□ -1.81
COL5A3P25940 RNA5SP217-201ENST00000515959 91 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.76□□□□□ -1.81
COL5A3P25940 AL096803.3-201ENST00000609032 532 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.76□□□□□ -1.81
COL5A3P25940 RMST_9.1-201ENST00000619945 193 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 PLCE1P1-201ENST00000622094 305 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 IGHVIII-44-202ENST00000636235 289 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 AL022322.2-201ENST00000624072 20397 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL5A3P25940 AC017002.4-201ENST00000604721 1525 ntBASIC3.76□□□□□ -1.81
COL5A3P25940 ASNSP1-201ENST00000518311 1939 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.75□□□□□ -1.81
COL5A3P25940 RPS3P1-201ENST00000456781 192 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 SUMO2P4-201ENST00000504193 276 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 AC113430.1-201ENST00000506872 718 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.75□□□□□ -1.81
COL5A3P25940 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL5A3P25940 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms