Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDHGA1Q9Y5H4 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU6-353P-201ENST00000364266 108 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU6-761P-201ENST00000384148 107 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 MIR7-3-201ENST00000384898 110 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 MIR620-201ENST00000385232 95 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC073264.1-201ENST00000411508 416 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC096533.1-201ENST00000411645 353 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC092638.1-201ENST00000411966 1275 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 MTCYBP24-201ENST00000420387 1106 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 HMGN2P21-201ENST00000447764 270 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 RPL38P1-201ENST00000460914 211 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 TMEM248P1-201ENST00000510579 951 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AP001207.1-201ENST00000524051 481 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 CYCSP28-201ENST00000534284 321 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC090616.5-202ENST00000582111 297 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC107982.3-201ENST00000584957 985 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AL355812.1-201ENST00000603215 216 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AL139022.2-201ENST00000606934 443 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC018754.1-201ENST00000607486 925 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU6-1192P-201ENST00000612197 107 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 VN1R74P-201ENST00000613259 503 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 RNU6-489P-201ENST00000618289 107 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 RMST_9.1-201ENST00000619945 193 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC009269.6-201ENST00000621778 588 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC007546.2-201ENST00000623996 360 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 AC012442.3-202ENST00000636742 206 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 DBF4P1-201ENST00000412976 1892 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 HSPD1P14-201ENST00000432666 1618 ntBASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
PCDHGA1Q9Y5H4 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 EOGT-210ENST00000615922 1931 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AL355578.1-201ENST00000607405 1328 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 SNORA63.1-201ENST00000362493 131 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 RNA5SP387-201ENST00000364226 106 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 TPT1P2-201ENST00000413105 503 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AL445584.1-201ENST00000431451 330 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 YWHAZP8-201ENST00000436935 731 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AL500522.2-201ENST00000448562 343 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 PRSS3P4-201ENST00000453323 162 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 FCF1P6-201ENST00000456841 595 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 NAP1L1P3-201ENST00000462291 880 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC110792.1-201ENST00000491826 472 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC005726.1-201ENST00000494679 427 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 VN1R87P-201ENST00000596706 487 ntBASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.05□□□□□ -1.76
PCDHGA1Q9Y5H4 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms