Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 MRPL42P4-201ENST00000453267 443 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 ATG12P2-201ENST00000456830 416 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 RPL5P30-201ENST00000465511 891 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 PRDX3P4-201ENST00000470828 747 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 RPS3AP22-201ENST00000488297 769 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AC010486.3-201ENST00000511602 785 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 MTND2P26-201ENST00000528255 1029 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 YPEL5P3-201ENST00000547227 352 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AC068446.3-201ENST00000555285 382 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AC022662.1-201ENST00000580252 331 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AP005137.2-201ENST00000609238 400 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 MIR7973-1-201ENST00000614683 76 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 uc_338.9-201ENST00000617424 182 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AP000676.3-201ENST00000623299 569 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 MIR1322-201ENST00000638013 71 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 MFSD8-245ENST00000641743 948 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
SIX4Q9UIU6 AC010300.1-201ENST00000600671 5134 ntBASIC4.32□□□□□ -1.72
SIX4Q9UIU6 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC006042.3-201ENST00000454684 1469 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC011266.1-201ENST00000624119 3569 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 MTND4P31-201ENST00000425607 1343 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 RNA5SP399-201ENST00000364003 117 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 EIF4EP1-201ENST00000422311 642 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL691449.1-201ENST00000426570 421 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 USP9YP11-201ENST00000427537 717 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 MTCO1P54-201ENST00000430139 712 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 RPS4XP15-201ENST00000489210 795 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC118282.2-201ENST00000508739 374 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 FABP5P12-201ENST00000515543 389 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 IGKV2-38-201ENST00000517443 247 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 OR5M7P-201ENST00000526140 972 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 RN7SL703P-201ENST00000578485 302 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC040904.1-201ENST00000590850 223 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 Z94722.1-201ENST00000604328 474 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC104662.1-201ENST00000604448 511 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL360219.1-201ENST00000610230 366 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC105227.2-201ENST00000615075 605 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 LINC00901.1-201ENST00000617252 152 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC067852.7-201ENST00000623270 535 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC004943.3-201ENST00000624116 600 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 AC087821.2-201ENST00000637086 450 ntBASIC4.31□□□□□ -1.72
SIX4Q9UIU6 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.31□□□□□ -1.72
SIX4Q9UIU6 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 AP005901.5-201ENST00000545779 1796 ntBASIC4.3□□□□□ -1.72
SIX4Q9UIU6 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 RN7SKP280-201ENST00000364196 304 ntBASIC4.3□□□□□ -1.72
SIX4Q9UIU6 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 RAP1BP1-201ENST00000412709 553 ntBASIC4.3□□□□□ -1.72
SIX4Q9UIU6 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 OR8F1P-201ENST00000425243 930 ntBASIC4.3□□□□□ -1.72
SIX4Q9UIU6 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.3□□□□□ -1.72
SIX4Q9UIU6 FABP3P2-201ENST00000453169 399 ntBASIC4.3□□□□□ -1.72
SIX4Q9UIU6 AC011979.1-201ENST00000472300 483 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms