Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF33CP-201ENST00000432492 2030 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 RPS4XP7-201ENST00000406274 780 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 TRGV6-201ENST00000417928 299 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AL592293.2-201ENST00000422292 996 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AL606490.7-201ENST00000433136 191 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 VN1R34P-201ENST00000447387 883 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 RPS27AP13-201ENST00000498403 237 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC009901.1-201ENST00000506703 541 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC111000.2-201ENST00000507775 550 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 RN7SKP13-201ENST00000515933 244 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 IGKV3OR22-2-201ENST00000517943 313 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AL355836.1-201ENST00000555951 870 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC034105.3-201ENST00000565294 442 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 ACTR3BP3-201ENST00000565577 979 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 MYL12BP1-201ENST00000569826 507 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 MIR4737-201ENST00000583979 81 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC012493.2-201ENST00000595083 291 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC015726.1-201ENST00000602353 681 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC090115.4-201ENST00000609970 188 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AP000894.4-201ENST00000610185 483 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 BX664608.1-201ENST00000610519 487 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 MIR6762-201ENST00000613340 86 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC009464.1-201ENST00000615731 469 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC022079.2-201ENST00000619739 566 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC002064.3-201ENST00000623448 346 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC093536.2-201ENST00000565257 1406 ntBASIC1.88□□□□□ -2.11
LINC00643Q86TS7 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
LINC00643Q86TS7 AC009501.3-201ENST00000605001 1352 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 RNVU1-3-201ENST00000364313 161 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 RNU6-1180P-201ENST00000364935 107 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 SNORA80E-201ENST00000384744 137 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 SNORA3.3-201ENST00000408712 125 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 RN7SKP33-201ENST00000410942 340 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 RBMY2QP-201ENST00000429799 1147 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 RPS29P17-201ENST00000430795 166 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 SLC25A24P1-202ENST00000434803 1220 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 LSM1P1-201ENST00000438629 273 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 RPS29P12-201ENST00000460178 152 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC034236.1-201ENST00000469891 373 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 RN7SL339P-201ENST00000580597 296 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AP001029.3-201ENST00000588063 596 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 TPMTP1-201ENST00000592307 737 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC245128.3-201ENST00000594721 748 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC024560.3-201ENST00000608482 349 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 MIR6726-201ENST00000613751 61 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC022509.4-201ENST00000621404 572 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 AC127024.6-201ENST00000621598 424 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 PABPC1P9-201ENST00000426076 1612 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC1.87□□□□□ -2.11
LINC00643Q86TS7 CR788268.1-201ENST00000603931 1809 ntBASIC1.87□□□□□ -2.11
LINC00643Q86TS7 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
LINC00643Q86TS7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms