Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 Y_RNA.408-201ENST00000383987 102 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 OR6C69P-201ENST00000394268 893 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 RNA5SP146-201ENST00000410743 123 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 PDSS1P1-201ENST00000422953 1114 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 ATP5F1P1-201ENST00000433775 569 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 COX7BP2-201ENST00000437976 242 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC098826.2-201ENST00000452011 651 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AL121877.1-201ENST00000453704 622 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 RPL5P32-201ENST00000454085 879 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AP000873.1-201ENST00000463987 400 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 OR4G11P-201ENST00000492842 939 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC025164.1-201ENST00000496249 478 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC116353.3-201ENST00000511215 249 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 PTGES3P3-201ENST00000511479 482 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 RNU6-488P-201ENST00000515918 99 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC087808.1-201ENST00000520501 361 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC090151.1-201ENST00000520784 730 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AP001781.1-201ENST00000530977 207 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 RN7SL802P-201ENST00000577858 299 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 RPL12P25-202ENST00000598100 674 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 ELOCP35-201ENST00000604289 336 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AL139344.1-201ENST00000605228 195 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC092954.1-201ENST00000609121 445 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AP000255.1-201ENST00000610276 676 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 TUSC7.1-201ENST00000610969 165 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC026368.1-201ENST00000614934 690 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC006065.5-201ENST00000623427 349 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC097655.1-201ENST00000635075 318 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 AC107081.3-201ENST00000612715 2034 ntBASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
PDLIM3Q53GG5 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MTND5P31-201ENST00000419366 1374 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC007685.1-201ENST00000329806 452 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 RNU6-492P-201ENST00000363035 104 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 RNU6-444P-201ENST00000383988 108 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MIR554-201ENST00000384874 96 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MIR483-201ENST00000385070 76 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 FCF1P5-201ENST00000406490 482 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC114755.2-201ENST00000413520 361 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 FCF1P2-201ENST00000415284 583 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 NUP35P2-201ENST00000416748 943 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 BX510359.2-201ENST00000417920 305 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 ELOCP9-201ENST00000418624 239 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MTND2P16-201ENST00000419987 799 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 RPL7P53-201ENST00000421245 739 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MTCO3P1-205ENST00000422088 832 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 RPS12P10-201ENST00000427031 377 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 HIGD1AP4-201ENST00000430194 280 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 USP9YP22-201ENST00000438971 294 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 SLC25A18P1-201ENST00000449385 454 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 RPL23AP56-201ENST00000460778 453 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC010307.1-201ENST00000467206 836 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC012158.1-204ENST00000483430 465 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 SETP14-201ENST00000497538 873 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC025674.1-201ENST00000507074 324 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MRPS36P3-201ENST00000519284 130 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms