Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 OR10J6P-201ENST00000289731 930 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 RNU6-619P-201ENST00000365146 108 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AL359837.1-201ENST00000381357 287 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 RPL31P52-201ENST00000407532 367 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 MIR1179-201ENST00000408703 91 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AL161631.1-201ENST00000417933 486 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 UBTFL3-201ENST00000418934 1024 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 KRR1P1-201ENST00000419430 803 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 RPL7P59-201ENST00000447700 943 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC004022.1-201ENST00000447766 1066 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AL451050.1-201ENST00000450126 415 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC079776.3-201ENST00000450665 370 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC133473.1-201ENST00000455173 299 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 USP9YP25-201ENST00000457708 443 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 RPL23AP2-201ENST00000471227 466 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC104689.1-201ENST00000473356 768 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 UBTFL6-201ENST00000477929 1024 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 MTND6P6-201ENST00000478031 263 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC012158.1-204ENST00000483430 465 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 VN1R105P-201ENST00000486595 910 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 HIGD1AP6-201ENST00000521833 279 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 IFITM8P-201ENST00000522529 394 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC009097.3-201ENST00000563557 1018 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 MIR3912-201ENST00000577566 105 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AP001269.3-201ENST00000588718 329 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC091057.2-201ENST00000602594 792 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC068790.5-201ENST00000602741 355 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC245389.1-201ENST00000605141 529 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC019278.1-201ENST00000623516 479 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 AP003072.4-201ENST00000624580 310 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USP41Q3LFD5 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USP41Q3LFD5 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.45□□□□□ -1.7
USP41Q3LFD5 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.45□□□□□ -1.7
USP41Q3LFD5 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 ZNF876P-202ENST00000398732 1485 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 RNA5SP22-201ENST00000365393 109 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 MIR554-201ENST00000384874 96 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 TAS2R15P-201ENST00000390674 928 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 ERHP2-201ENST00000402323 299 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 VN1R8P-201ENST00000407739 893 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AL031736.2-201ENST00000426573 787 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 PPIAP17-201ENST00000438507 471 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 RAB11AP1-201ENST00000442978 646 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 RPS27AP15-201ENST00000447672 466 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC096992.1-201ENST00000459808 709 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 RPL38P1-201ENST00000460914 211 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC068587.2-201ENST00000478386 781 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 RPS6P4-201ENST00000494693 758 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC048346.1-201ENST00000510247 144 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 NPM1P41-201ENST00000512920 831 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC023632.4-201ENST00000517783 191 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 MIR4716-201ENST00000579628 84 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC061975.8-201ENST00000587058 721 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 BNIP3P33-201ENST00000598912 569 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AP003973.1-201ENST00000604639 691 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC007349.4-201ENST00000608114 532 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AL355493.4-201ENST00000618530 292 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 AL157770.1-201ENST00000623049 439 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AF001550.2-201ENST00000636643 217 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms