Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 GLS-203ENST00000409215 632 ntTSL 4 BASIC2.98□□□□□ -1.93
FOXF1Q12946 RNA5SP293-201ENST00000410527 113 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXF1Q12946 AC063979.1-201ENST00000415539 377 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXF1Q12946 AL049610.1-201ENST00000423374 372 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXF1Q12946 GTF2IP23-201ENST00000423746 351 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXF1Q12946 ATP5C1P1-201ENST00000441945 895 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXF1Q12946 RPL7P31-201ENST00000450192 724 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 RPL7P49-201ENST00000471402 708 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 RN7SL442P-201ENST00000473804 320 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 AC087385.1-201ENST00000475062 312 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 RPL23AP44-201ENST00000482216 473 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 MTCO3P42-201ENST00000509488 518 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 PHBP14-201ENST00000512887 367 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 MTCO3P39-201ENST00000514812 518 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXF1Q12946 FABP5P12-201ENST00000515543 389 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXF1Q12946 AC025857.1-201ENST00000525252 377 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 UBE2NP1-201ENST00000545592 458 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXF1Q12946 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXF1Q12946 AC083899.3-201ENST00000603413 594 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXF1Q12946 uc_338.1-201ENST00000612113 180 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXF1Q12946 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXF1Q12946 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXF1Q12946 AC007496.3-201ENST00000624987 3443 ntBASIC2.98□□□□□ -1.93
FOXF1Q12946 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXF1Q12946 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXF1Q12946 RNA5SP72-201ENST00000364442 117 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 RNU6-304P-201ENST00000364855 107 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXF1Q12946 RNVU1-14-201ENST00000384770 164 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 RNA5SP229-201ENST00000410809 99 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AIMP1P1-201ENST00000418670 937 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 GLRXP1-201ENST00000423261 334 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 ETF1P3-201ENST00000430422 1160 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 MTCO3P21-201ENST00000430791 643 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 BX679664.1-201ENST00000434429 253 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXF1Q12946 AC006539.3-201ENST00000454258 129 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 HMGN1P18-201ENST00000457642 277 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC087312.1-201ENST00000471411 480 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC021146.5-201ENST00000503544 545 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.97□□□□□ -1.93
FOXF1Q12946 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.97□□□□□ -1.93
FOXF1Q12946 SNORD116-26-201ENST00000516006 96 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 RNA5SP309-201ENST00000516670 106 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXF1Q12946 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXF1Q12946 AC006518.1-201ENST00000541449 943 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC2.97□□□□□ -1.93
FOXF1Q12946 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXF1Q12946 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXF1Q12946 AC037471.2-201ENST00000564941 598 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXF1Q12946 AC008507.1-201ENST00000587506 734 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXF1Q12946 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC2.97□□□□□ -1.93
FOXF1Q12946 AC073657.2-201ENST00000605661 303 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC012531.5-201ENST00000611375 151 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AL157817.1-201ENST00000614264 790 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC018816.2-201ENST00000621460 353 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 C2orf27A-204ENST00000623058 969 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 AC004943.3-201ENST00000624116 600 ntBASIC2.97□□□□□ -1.93
FOXF1Q12946 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXF1Q12946 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXF1Q12946 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXF1Q12946 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
FOXF1Q12946 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXF1Q12946 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
FOXF1Q12946 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXF1Q12946 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
FOXF1Q12946 AL034374.1-201ENST00000406329 351 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 RNA5SP31-201ENST00000411144 127 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXF1Q12946 HMGN1P24-201ENST00000412282 298 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXF1Q12946 TRGV6-201ENST00000417928 299 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
FOXF1Q12946 AC005300.1-201ENST00000428401 373 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 AC005326.1-201ENST00000429197 123 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXF1Q12946 AC093716.1-201ENST00000435923 377 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 CST9LP2-201ENST00000437612 320 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 CACYBPP1-201ENST00000438592 684 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 HMGB3P11-201ENST00000440127 604 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 AL606490.8-201ENST00000441624 319 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXF1Q12946 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC2.96□□□□□ -1.94
FOXF1Q12946 OR7L1P-201ENST00000456181 380 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 AC021205.1-201ENST00000468797 348 ntBASIC2.96□□□□□ -1.94
FOXF1Q12946 RN7SL601P-201ENST00000471221 293 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms