Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXC4P09017 RN7SL293P-201ENST00000481765 281 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 AC025768.1-201ENST00000510057 267 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 AC010285.3-201ENST00000511668 676 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXC4P09017 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC4P09017 OR8I1P-201ENST00000529291 931 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 AC106785.3-201ENST00000564064 847 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 MIR4458-201ENST00000578872 75 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXC4P09017 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXC4P09017 BNIP3P22-201ENST00000593399 556 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 BRDTP1-201ENST00000605735 677 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 AC103710.3-201ENST00000608157 948 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 AP003355.3-201ENST00000623465 114 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 CR392039.4-201ENST00000624968 501 ntBASIC3.56□□□□□ -1.84
HOXC4P09017 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXC4P09017 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXC4P09017 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
HOXC4P09017 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC4P09017 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC4P09017 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC4P09017 AC090337.1-201ENST00000579651 2074 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 SNORA63.1-201ENST00000362493 131 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXC4P09017 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 AL589655.1-201ENST00000405398 482 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 CRYBB2P1-203ENST00000415709 538 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 MRPS33P4-201ENST00000434892 317 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AC009263.1-201ENST00000441193 1239 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 RPL34P26-201ENST00000445636 354 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 MTND2P8-201ENST00000450555 1025 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AC091153.1-201ENST00000466297 402 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 RPL23AP73-201ENST00000492507 471 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 SUMO1P1-201ENST00000497904 306 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXC4P09017 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 MTND3P24-201ENST00000506306 329 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 AC010342.1-201ENST00000514047 877 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXC4P09017 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 AL161713.1-201ENST00000555538 145 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC4P09017 LINC00557-201ENST00000563184 1279 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 MIR3922-201ENST00000585192 84 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AC005776.1-201ENST00000603164 290 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AL139022.2-201ENST00000606934 443 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 AC092628.2-201ENST00000622492 339 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 AC004777.1-201ENST00000624317 287 ntBASIC3.55□□□□□ -1.84
HOXC4P09017 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC4P09017 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXC4P09017 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC4P09017 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC4P09017 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC4P09017 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC4P09017 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC4P09017 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC4P09017 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC4P09017 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC4P09017 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HOXC4P09017 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXC4P09017 RNU6-452P-201ENST00000384406 107 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 HMGN2P8-201ENST00000391458 268 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 AL355143.1-201ENST00000407101 841 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 RN7SKP111-201ENST00000410349 271 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC4P09017 RPL21P109-201ENST00000422213 475 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC4P09017 AC073063.1-201ENST00000434352 607 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 NDUFB1P1-201ENST00000435191 180 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 CYCSP43-201ENST00000438233 310 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXC4P09017 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC4P09017 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC4P09017 PRDX3P3-201ENST00000447765 522 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC4P09017 AC023598.1-201ENST00000472521 361 ntBASIC3.54□□□□□ -1.84
HOXC4P09017 AL049830.2-201ENST00000480072 201 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms