Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 EEF1A1P41-201ENST00000414667 207 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC002075.2-201ENST00000425207 252 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 ELOCP23-201ENST00000452014 332 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC099560.2-201ENST00000457554 255 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC091515.1-201ENST00000548110 679 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AL162574.2-201ENST00000614618 657 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AL645568.2-201ENST00000432815 1337 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 RPS4XP5-202ENST00000449995 1334 ntBASIC4.82□□□□□ -1.64
SCAPERQ9BY12 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.82□□□□□ -1.64
SCAPERQ9BY12 AL672296.1-201ENST00000427780 2158 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 AC012065.2-201ENST00000421295 375 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 NPM1P13-201ENST00000452663 865 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 AC087312.1-201ENST00000471411 480 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 RN7SL432P-201ENST00000484057 298 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 RN7SKP132-201ENST00000516001 208 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 SNORA70.19-201ENST00000516717 90 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 uc_338.25-201ENST00000613756 156 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 HSPA8P1-201ENST00000425843 1833 ntBASIC4.81□□□□□ -1.64
SCAPERQ9BY12 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SCAPERQ9BY12 SNORA71.1-201ENST00000364523 117 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC126124.2-201ENST00000413542 321 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 MIR4319-201ENST00000577285 85 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 BNIP3P38-201ENST00000601117 544 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 U7.8-201ENST00000619968 63 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC062016.1-201ENST00000355719 319 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SCAPERQ9BY12 MIR3074-201ENST00000384885 81 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AL391417.1-201ENST00000404100 426 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 RPL30P2-201ENST00000414021 291 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC069540.1-201ENST00000446320 988 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC092851.1-201ENST00000535964 478 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 AC099506.2-201ENST00000623074 221 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 MIR622-201ENST00000638396 96 ntBASIC4.8□□□□□ -1.64
SCAPERQ9BY12 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 AL136360.1-201ENST00000503377 1900 ntBASIC4.79□□□□□ -1.64
SCAPERQ9BY12 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 AL034351.1-201ENST00000605288 668 ntBASIC4.79□□□□□ -1.64
SCAPERQ9BY12 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.79□□□□□ -1.64
SCAPERQ9BY12 AC017071.1-201ENST00000564407 2204 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCAPERQ9BY12 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCAPERQ9BY12 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SCAPERQ9BY12 AL139413.1-201ENST00000421309 217 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.78□□□□□ -1.64
SCAPERQ9BY12 AC105272.1-201ENST00000438604 198 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 AC108938.1-201ENST00000451204 136 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 MTCO3P16-201ENST00000454456 754 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 ACTG1P13-201ENST00000486987 1043 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.78□□□□□ -1.64
SCAPERQ9BY12 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 AC103783.1-201ENST00000520506 373 ntBASIC4.78□□□□□ -1.64
SCAPERQ9BY12 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.78□□□□□ -1.64
SCAPERQ9BY12 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms