Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC093227.2-201ENST00000589357 285 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC091488.1-201ENST00000604239 660 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 AC103710.3-201ENST00000608157 948 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 FP236240.3-201ENST00000623061 327 ntBASIC3.83□□□□□ -1.8
VPS35Q96QK1 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS35Q96QK1 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 NSRP1P1-201ENST00000444067 1693 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 NMD3P1-201ENST00000439704 1488 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 MTND4P8-201ENST00000514997 1362 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC016716.1-201ENST00000265882 708 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 SNORA70E-201ENST00000384492 135 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 Z74696.2-201ENST00000436514 498 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 RPS29P7-201ENST00000439662 171 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC092170.1-201ENST00000440211 356 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC004865.1-201ENST00000442276 1003 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC012170.1-201ENST00000495139 359 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 OR5H3P-201ENST00000502817 919 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC008628.1-201ENST00000508663 265 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 NPM1P41-201ENST00000512920 831 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 RNA5SP143-201ENST00000516936 115 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC095057.3-201ENST00000567102 1157 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 AC020978.9-201ENST00000624380 1141 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 FAM157B-203ENST00000639350 358 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS35Q96QK1 BDP1P-201ENST00000582658 1990 ntBASIC3.82□□□□□ -1.8
VPS35Q96QK1 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS35Q96QK1 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 FAM91A3P-201ENST00000456826 2544 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 DCAF13P1-201ENST00000495256 1330 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 RNU2-72P-201ENST00000411175 163 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 RPL7P2-201ENST00000427639 268 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC017099.1-201ENST00000448261 1028 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC109458.1-201ENST00000508858 316 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 RN7SKP277-201ENST00000516895 283 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 RNU6-352P-201ENST00000516908 107 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AP003049.1-201ENST00000529418 457 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 HSPE1P5-201ENST00000561489 272 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 MIR5685-201ENST00000579080 79 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC006065.5-201ENST00000623427 349 ntBASIC3.81□□□□□ -1.8
VPS35Q96QK1 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS35Q96QK1 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS35Q96QK1 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS35Q96QK1 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS35Q96QK1 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS35Q96QK1 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS35Q96QK1 RNU6-328P-201ENST00000390887 106 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 AL445189.1-201ENST00000405722 338 ntBASIC3.8□□□□□ -1.8
VPS35Q96QK1 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms