Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC112Q8NEF3 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC007899.1-201ENST00000412776 775 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 MTCYBP7-201ENST00000419540 1134 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC092832.1-201ENST00000422934 400 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC097262.1-201ENST00000452559 548 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AL133162.1-201ENST00000463228 453 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC078785.3-201ENST00000476607 425 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 DUXAP2-201ENST00000519198 589 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AP001180.3-201ENST00000582221 145 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC010680.4-201ENST00000605334 543 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC007620.3-201ENST00000608131 497 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC019176.2-201ENST00000611579 315 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AL121772.2-201ENST00000614331 297 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC004943.3-201ENST00000624116 600 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC004777.1-201ENST00000624317 287 ntBASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC112Q8NEF3 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 RPL7P60-201ENST00000397636 735 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 SNORA11.1-201ENST00000408133 129 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 RNU2-65P-201ENST00000410162 185 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AC012498.1-201ENST00000424037 437 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 HMGB3P11-201ENST00000440127 604 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AC026403.1-201ENST00000518938 295 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AP000619.3-201ENST00000535634 1127 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 AL049844.2-201ENST00000604280 628 ntBASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC112Q8NEF3 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 FRG1CP-201ENST00000358464 769 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 SNORA71.3-201ENST00000362582 128 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 RAB9AP3-201ENST00000412737 573 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AC009965.2-201ENST00000425328 970 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 TRGV7-201ENST00000427089 353 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 RAB9AP1-201ENST00000449393 573 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 PDSS1P2-201ENST00000449397 678 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 Vault.1-201ENST00000516474 102 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 HIGD1AP10-201ENST00000527837 282 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AC067852.4-201ENST00000590314 478 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AC123768.4-201ENST00000616244 701 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 AL034408.1-202ENST00000636088 415 ntBASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC112Q8NEF3 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.73□□□□□ -1.81
CCDC112Q8NEF3 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.73□□□□□ -1.81
CCDC112Q8NEF3 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC112Q8NEF3 SNORA63.1-201ENST00000362493 131 ntBASIC3.73□□□□□ -1.81
CCDC112Q8NEF3 MIR124-3-201ENST00000384866 87 ntBASIC3.73□□□□□ -1.81
CCDC112Q8NEF3 RPL21P3-201ENST00000395517 478 ntBASIC3.73□□□□□ -1.81
CCDC112Q8NEF3 RSL24D1P1-201ENST00000404972 493 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms