Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS28Q9UK41 AL133412.1-201ENST00000380194 2992 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS28Q9UK41 SEPT7P7-201ENST00000420492 1301 ntBASIC4.46□□□□□ -1.7
VPS28Q9UK41 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS28Q9UK41 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS28Q9UK41 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 RNU6-492P-201ENST00000363035 104 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 RNA5SP175-201ENST00000364275 119 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 SNORD65.1-201ENST00000390889 71 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC097374.1-203ENST00000400783 485 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AL023807.1-201ENST00000407932 359 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 SNORA74C-2-201ENST00000411179 201 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 OR4K6P-201ENST00000416478 897 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC092634.6-201ENST00000418558 192 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC005517.2-201ENST00000424673 553 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 SEPT7P5-201ENST00000434048 306 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 GTF2IP7-202ENST00000436677 309 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AL353748.1-201ENST00000440753 474 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC112492.1-201ENST00000449607 712 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 MTCO3P2-201ENST00000457365 171 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC113420.1-201ENST00000507903 571 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS28Q9UK41 PARP4P3-201ENST00000510265 317 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC005798.1-201ENST00000513715 387 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 RN7SKP122-201ENST00000515923 296 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 ZNF705CP-201ENST00000530515 889 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS28Q9UK41 MTCYBP23-201ENST00000558717 1102 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS28Q9UK41 MIR3912-201ENST00000577566 105 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 MIR3939-201ENST00000582614 106 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC005255.1-201ENST00000593748 216 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC016597.2-201ENST00000613256 341 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AL021997.2-201ENST00000615674 271 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC121761.2-201ENST00000617300 689 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 AC090772.4-201ENST00000623599 362 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 FP325313.1-201ENST00000638228 703 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS28Q9UK41 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 AP005901.5-201ENST00000545779 1796 ntBASIC4.45□□□□□ -1.7
VPS28Q9UK41 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
VPS28Q9UK41 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AL158163.1-201ENST00000603915 1649 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 SNORA70.2-201ENST00000364506 135 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 SUGT1P1-201ENST00000379514 476 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 RPL23AP26-201ENST00000412728 464 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 MTCO3P1-205ENST00000422088 832 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 RPS12P5-201ENST00000423449 371 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS28Q9UK41 RPL23AP16-201ENST00000441715 421 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 EXOSC3P1-201ENST00000448649 500 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AL034418.1-201ENST00000448675 860 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 TRBV26-201ENST00000456572 344 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC010618.1-201ENST00000469924 477 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC010301.1-201ENST00000473936 355 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS28Q9UK41 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 IGLVIV-53-201ENST00000520107 367 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AL352979.3-201ENST00000553515 247 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 PARP1P2-201ENST00000556806 195 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 SULT1C2P1-202ENST00000562418 459 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC069545.1-201ENST00000605671 358 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AL513477.2-201ENST00000607858 568 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AL158196.1-201ENST00000616786 434 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms