Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH6P52701 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH6P52701 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH6P52701 AC008126.1-201ENST00000549019 480 ntBASIC4.67□□□□□ -1.66
MSH6P52701 MTND2P17-201ENST00000550281 688 ntBASIC4.67□□□□□ -1.66
MSH6P52701 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH6P52701 AC103881.1-201ENST00000603476 538 ntBASIC4.67□□□□□ -1.66
MSH6P52701 AL162713.1-201ENST00000604480 262 ntBASIC4.67□□□□□ -1.66
MSH6P52701 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC4.67□□□□□ -1.66
MSH6P52701 AC096586.2-201ENST00000610260 441 ntBASIC4.67□□□□□ -1.66
MSH6P52701 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH6P52701 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH6P52701 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.67□□□□□ -1.66
MSH6P52701 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.67□□□□□ -1.66
MSH6P52701 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSH6P52701 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSH6P52701 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
MSH6P52701 RNA5SP322-201ENST00000363617 119 ntBASIC4.66□□□□□ -1.66
MSH6P52701 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.66□□□□□ -1.66
MSH6P52701 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.66□□□□□ -1.66
MSH6P52701 MTCO3P17-201ENST00000443775 513 ntBASIC4.66□□□□□ -1.66
MSH6P52701 RPL7L1P1-201ENST00000448259 785 ntBASIC4.66□□□□□ -1.66
MSH6P52701 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.66□□□□□ -1.66
MSH6P52701 VN1R104P-201ENST00000505115 1009 ntBASIC4.66□□□□□ -1.66
MSH6P52701 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH6P52701 AC090281.1-201ENST00000523019 276 ntBASIC4.66□□□□□ -1.66
MSH6P52701 PSMA2P1-201ENST00000526365 646 ntBASIC4.66□□□□□ -1.66
MSH6P52701 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.66□□□□□ -1.66
MSH6P52701 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.66□□□□□ -1.66
MSH6P52701 AL713998.2-201ENST00000604538 1198 ntBASIC4.66□□□□□ -1.66
MSH6P52701 AC006946.3-201ENST00000609791 756 ntBASIC4.66□□□□□ -1.66
MSH6P52701 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.66□□□□□ -1.66
MSH6P52701 AC116096.1-201ENST00000566804 2314 ntBASIC4.66□□□□□ -1.66
MSH6P52701 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH6P52701 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.66□□□□□ -1.66
MSH6P52701 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH6P52701 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
MSH6P52701 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
MSH6P52701 ZNF603P-201ENST00000405613 487 ntBASIC4.65□□□□□ -1.66
MSH6P52701 OR6K4P-201ENST00000423179 955 ntBASIC4.65□□□□□ -1.66
MSH6P52701 AL353705.1-201ENST00000433468 480 ntBASIC4.65□□□□□ -1.66
MSH6P52701 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.65□□□□□ -1.66
MSH6P52701 ANP32BP2-201ENST00000454525 545 ntBASIC4.65□□□□□ -1.66
MSH6P52701 OR9N1P-201ENST00000491296 333 ntBASIC4.65□□□□□ -1.66
MSH6P52701 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
MSH6P52701 AC112198.1-201ENST00000505369 1220 ntBASIC4.65□□□□□ -1.66
MSH6P52701 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.65□□□□□ -1.66
MSH6P52701 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.65□□□□□ -1.66
MSH6P52701 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.65□□□□□ -1.66
MSH6P52701 AP000926.4-201ENST00000527351 454 ntBASIC4.65□□□□□ -1.66
MSH6P52701 HIGD1AP1-201ENST00000550979 275 ntBASIC4.65□□□□□ -1.66
MSH6P52701 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.65□□□□□ -1.66
MSH6P52701 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.65□□□□□ -1.66
MSH6P52701 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.65□□□□□ -1.66
MSH6P52701 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.65□□□□□ -1.66
MSH6P52701 BRDTP1-201ENST00000605735 677 ntBASIC4.65□□□□□ -1.66
MSH6P52701 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
MSH6P52701 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.65□□□□□ -1.66
MSH6P52701 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.66
MSH6P52701 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.65□□□□□ -1.66
MSH6P52701 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
MSH6P52701 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
MSH6P52701 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSH6P52701 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
MSH6P52701 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
MSH6P52701 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
MSH6P52701 OR52B1P-201ENST00000316506 909 ntBASIC4.65□□□□□ -1.67
MSH6P52701 HMGN2P8-201ENST00000391458 268 ntBASIC4.65□□□□□ -1.67
MSH6P52701 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.65□□□□□ -1.67
MSH6P52701 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH6P52701 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH6P52701 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH6P52701 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH6P52701 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH6P52701 AP001960.1-201ENST00000506494 658 ntBASIC4.65□□□□□ -1.67
MSH6P52701 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH6P52701 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
MSH6P52701 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH6P52701 AP006245.1-201ENST00000522549 120 ntBASIC4.65□□□□□ -1.67
MSH6P52701 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.65□□□□□ -1.67
MSH6P52701 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.65□□□□□ -1.67
MSH6P52701 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
MSH6P52701 FAM35BP-202ENST00000497389 3337 ntBASIC4.64□□□□□ -1.67
MSH6P52701 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH6P52701 NCAPGP1-201ENST00000505112 1814 ntBASIC4.64□□□□□ -1.67
MSH6P52701 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
MSH6P52701 RNA5SP42-201ENST00000364278 115 ntBASIC4.64□□□□□ -1.67
MSH6P52701 MIR137-201ENST00000385223 102 ntBASIC4.64□□□□□ -1.67
MSH6P52701 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.64□□□□□ -1.67
MSH6P52701 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.64□□□□□ -1.67
MSH6P52701 MRPS18BP2-201ENST00000434310 759 ntBASIC4.64□□□□□ -1.67
MSH6P52701 AC133473.1-201ENST00000455173 299 ntBASIC4.64□□□□□ -1.67
MSH6P52701 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.64□□□□□ -1.67
MSH6P52701 AL133477.1-201ENST00000457472 514 ntBASIC4.64□□□□□ -1.67
MSH6P52701 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.64□□□□□ -1.67
MSH6P52701 AC093755.1-201ENST00000512950 1023 ntBASIC4.64□□□□□ -1.67
MSH6P52701 AC103783.1-201ENST00000520506 373 ntBASIC4.64□□□□□ -1.67
MSH6P52701 AC008489.1-201ENST00000524271 483 ntBASIC4.64□□□□□ -1.67
MSH6P52701 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.64□□□□□ -1.67
MSH6P52701 AC025423.2-201ENST00000537570 439 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms