Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 VN1R79P-201ENST00000593540 513 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AC244505.7-201ENST00000599675 272 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 CLIC4P2-201ENST00000601934 717 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AC010201.1-201ENST00000605051 540 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL355816.1-201ENST00000607951 118 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 AC140725.3-201ENST00000616193 880 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL138721.1-201ENST00000616756 179 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD4P09016 AC015726.3-201ENST00000624501 418 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 CDRT1-208ENST00000630868 794 ntBASIC3.79□□□□□ -1.8
HOXD4P09016 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXD4P09016 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXD4P09016 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXD4P09016 AL161912.2-201ENST00000565707 3007 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 MTCO1P18-201ENST00000455518 1419 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD4P09016 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 ZNF849P-201ENST00000594711 1566 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 RNA5SP151-201ENST00000365632 117 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
HOXD4P09016 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 RNU6-1279P-201ENST00000383917 103 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 U6.112-201ENST00000384129 70 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AP000357.1-201ENST00000409926 1165 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 RNA5SP239-201ENST00000410218 129 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 HMGB3P31-201ENST00000413333 595 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXD4P09016 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 MTCYBP15-201ENST00000433123 1127 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD4P09016 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 GTF2IP12-201ENST00000456547 356 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD4P09016 AC026414.1-201ENST00000504046 698 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD4P09016 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD4P09016 AC010285.3-201ENST00000511668 676 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD4P09016 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD4P09016 RN7SKP265-201ENST00000516448 223 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 RNU1-45P-201ENST00000517191 141 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AP002812.4-201ENST00000532139 286 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD4P09016 AC011611.5-201ENST00000552477 578 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXD4P09016 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD4P09016 AL132857.1-201ENST00000555180 708 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 MTCYBP23-201ENST00000558717 1102 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 ZNF971P-201ENST00000562068 1249 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXD4P09016 OR2BH1P-201ENST00000608850 864 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 MIR6075-201ENST00000620782 95 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AL109659.3-201ENST00000624985 950 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD4P09016 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXD4P09016 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXD4P09016 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD4P09016 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXD4P09016 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD4P09016 GTF2H2B-203ENST00000508065 1432 ntBASIC3.78□□□□□ -1.8
HOXD4P09016 AL049555.1-201ENST00000562834 1933 ntBASIC3.78□□□□□ -1.81
HOXD4P09016 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC092162.3-201ENST00000624511 1624 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
HOXD4P09016 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXD4P09016 PTMAP2-201ENST00000397627 327 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 USP9YP21-201ENST00000420603 432 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 NANOGP5-201ENST00000424456 877 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD4P09016 OSTCP5-201ENST00000425293 453 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AL365396.1-201ENST00000430854 671 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
HOXD4P09016 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC007389.2-201ENST00000434630 306 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD4P09016 HSFY3P-201ENST00000444242 1191 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AL358794.1-201ENST00000445689 381 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 MTND2P8-201ENST00000450555 1025 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AL139824.2-201ENST00000458731 1095 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 snoU13.22-201ENST00000459428 104 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 RPL38P1-201ENST00000460914 211 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 RPL7P22-201ENST00000466005 733 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 RPS4XP6-201ENST00000477670 797 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC098862.1-201ENST00000504991 413 ntBASIC3.77□□□□□ -1.81
HOXD4P09016 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD4P09016 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms