Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RPL12P26-201ENST00000452430 487 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 HMGN2P16-201ENST00000456802 261 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 MLLT10P2-201ENST00000506434 249 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AC114322.1-201ENST00000506771 926 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.66□□□□□ -1.5
HMGB1P09429 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.66□□□□□ -1.5
HMGB1P09429 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.66□□□□□ -1.5
HMGB1P09429 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC5.66□□□□□ -1.5
HMGB1P09429 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.66□□□□□ -1.5
HMGB1P09429 BGLT3-201ENST00000564523 994 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 RPL23AP87-202ENST00000573039 466 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 RN7SL339P-201ENST00000580597 296 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 RNF138P2-201ENST00000603490 592 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AL353600.1-201ENST00000608148 251 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC5.66□□□□□ -1.5
HMGB1P09429 AL391262.2-201ENST00000622466 494 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AC018445.2-201ENST00000622987 260 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HMGB1P09429 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HMGB1P09429 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
HMGB1P09429 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.66□□□□□ -1.5
HMGB1P09429 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HMGB1P09429 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HMGB1P09429 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC5.65□□□□□ -1.5
HMGB1P09429 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.65□□□□□ -1.5
HMGB1P09429 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HMGB1P09429 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
HMGB1P09429 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HMGB1P09429 DEFB109C-201ENST00000382575 264 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 DEFB109B-201ENST00000382656 264 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HMGB1P09429 ARL4AP5-201ENST00000404372 599 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 MTCO2P8-201ENST00000412213 658 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.65□□□□□ -1.5
HMGB1P09429 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HMGB1P09429 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.65□□□□□ -1.5
HMGB1P09429 AC106883.1-201ENST00000418805 562 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 RPS26P2-201ENST00000440331 348 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 MTND2P20-201ENST00000440805 661 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 Z95327.1-201ENST00000446082 482 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.65□□□□□ -1.5
HMGB1P09429 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.65□□□□□ -1.5
HMGB1P09429 snoU13.20-201ENST00000459180 104 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC018638.3-201ENST00000461273 132 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 RPL23AP62-201ENST00000463396 453 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 RPS4XP10-201ENST00000465034 731 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 ST13P14-201ENST00000474095 734 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC004453.1-201ENST00000487895 408 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HMGB1P09429 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.65□□□□□ -1.5
HMGB1P09429 BTF3P13-201ENST00000513224 490 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 RNU6-583P-201ENST00000516012 92 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 SCARNA1-201ENST00000517138 166 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.65□□□□□ -1.5
HMGB1P09429 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.65□□□□□ -1.5
HMGB1P09429 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.65□□□□□ -1.5
HMGB1P09429 AC133555.2-201ENST00000550213 292 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.65□□□□□ -1.5
HMGB1P09429 AC093249.4-201ENST00000564755 259 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AP001269.3-201ENST00000588718 329 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC069304.2-201ENST00000605154 435 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.65□□□□□ -1.5
HMGB1P09429 AL445222.1-201ENST00000607259 628 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC090425.2-201ENST00000608818 501 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC097505.1-201ENST00000610199 565 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 FAM27B-201ENST00000610601 213 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.65□□□□□ -1.5
HMGB1P09429 AL590240.3-201ENST00000621416 943 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC004009.2-201ENST00000623016 728 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 AC015871.5-202ENST00000623252 701 ntBASIC5.65□□□□□ -1.5
HMGB1P09429 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.65□□□□□ -1.5
HMGB1P09429 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HMGB1P09429 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
HMGB1P09429 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
HMGB1P09429 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
HMGB1P09429 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC5.64□□□□□ -1.51
HMGB1P09429 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.64□□□□□ -1.51
HMGB1P09429 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HMGB1P09429 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.64□□□□□ -1.51
HMGB1P09429 AL645927.1-201ENST00000396783 406 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 ERHP2-201ENST00000402323 299 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 AL359643.1-201ENST00000404109 423 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.64□□□□□ -1.51
HMGB1P09429 MIR1271-201ENST00000408537 86 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 RN7SKP125-201ENST00000410481 302 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC5.64□□□□□ -1.51
HMGB1P09429 AC127526.1-201ENST00000417526 366 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 AL049610.1-201ENST00000423374 372 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 ZDHHC20P2-201ENST00000424108 429 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 FABP7P2-201ENST00000429946 379 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.64□□□□□ -1.51
HMGB1P09429 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.64□□□□□ -1.51
HMGB1P09429 FABP3P2-201ENST00000453169 399 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 MTCO3P11-201ENST00000455103 774 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 AL445433.1-201ENST00000457507 257 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 MTND1P16-201ENST00000465177 898 ntBASIC5.64□□□□□ -1.51
HMGB1P09429 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.64□□□□□ -1.51
HMGB1P09429 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HMGB1P09429 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms