Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
LHX3Q9UBR4 IPO8P1-201ENST00000455509 3109 ntBASIC3.9□□□□□ -1.78
LHX3Q9UBR4 MTCO1P6-201ENST00000481192 1384 ntBASIC3.9□□□□□ -1.78
LHX3Q9UBR4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.78
LHX3Q9UBR4 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 RPL32P23-201ENST00000397237 405 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 DNAJC19P6-201ENST00000401853 280 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC096638.2-201ENST00000434965 711 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL096829.2-201ENST00000446582 742 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 RPS4XP6-201ENST00000477670 797 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 RWDD4P1-201ENST00000488019 565 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL139099.1-201ENST00000497398 403 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC026726.1-201ENST00000512859 601 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 RN7SKP96-201ENST00000516948 297 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC090912.3-201ENST00000609775 533 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC026368.1-201ENST00000614934 690 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AP000943.4-201ENST00000622912 357 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC068880.4-201ENST00000623082 495 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC093875.1-201ENST00000623688 504 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC020978.9-201ENST00000624380 1141 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 MIR6715B-201ENST00000637172 77 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 AC073055.1-201ENST00000456901 1621 ntBASIC3.9□□□□□ -1.79
LHX3Q9UBR4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
LHX3Q9UBR4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 RNU1-64P-201ENST00000365443 163 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 SNORD65C-201ENST00000390962 71 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 JKAMPP1-201ENST00000413804 919 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC087650.1-201ENST00000431445 468 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AL353748.1-201ENST00000440753 474 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 RPS26P30-201ENST00000443431 335 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 MTND1P33-201ENST00000446251 917 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AL049829.1-201ENST00000465411 156 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 RPL5P30-201ENST00000465511 891 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC091959.2-201ENST00000477363 321 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC126121.1-201ENST00000482313 553 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC025445.1-201ENST00000502728 300 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC016550.1-201ENST00000505348 785 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC005351.1-201ENST00000511152 786 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC093853.1-201ENST00000515689 483 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC090877.1-201ENST00000561418 344 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC107982.3-201ENST00000584957 985 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC093227.2-201ENST00000589357 285 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 VN1R88P-201ENST00000596787 292 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AL020997.2-201ENST00000602607 184 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 MRPS35P3-201ENST00000603189 709 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 BNIP3P4-201ENST00000604946 565 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AL451086.1-201ENST00000605596 223 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 LINC00901.1-201ENST00000617252 152 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC078880.5-201ENST00000617845 421 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 MIR6864-201ENST00000617935 70 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC233309.1-201ENST00000619522 751 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 AC079684.1-201ENST00000621405 437 ntBASIC3.89□□□□□ -1.79
LHX3Q9UBR4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LHX3Q9UBR4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms