Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORA71B-202ENST00000439232 272 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 RPL7P1-201ENST00000468161 747 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC007537.2-201ENST00000472093 511 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC005726.1-201ENST00000494679 427 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 RPL23AP55-201ENST00000498163 452 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AL592156.1-201ENST00000508758 304 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 RNU6-202P-201ENST00000515998 96 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC109635.4-202ENST00000531666 412 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 MTND5P21-201ENST00000531961 522 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 OR8K4P-201ENST00000534608 872 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC010735.1-201ENST00000567305 1026 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 KPNA2P3-201ENST00000584190 848 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AL355812.1-201ENST00000603215 216 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC096586.1-201ENST00000610267 561 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC064801.1-201ENST00000612025 407 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC083809.1-201ENST00000615051 472 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 XIST_intron.1-201ENST00000619444 68 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 FP325313.1-201ENST00000638228 703 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 AC027287.1-201ENST00000553115 1453 ntBASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
ZNF540Q8NDQ6 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.9□□□□□ -1.78
ZNF540Q8NDQ6 AC138915.3-201ENST00000562908 1389 ntBASIC3.9□□□□□ -1.78
ZNF540Q8NDQ6 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
ZNF540Q8NDQ6 AL359893.1-201ENST00000447628 1580 ntBASIC3.9□□□□□ -1.78
ZNF540Q8NDQ6 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
ZNF540Q8NDQ6 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 MTHFD2P2-201ENST00000407725 247 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC073143.1-201ENST00000436316 395 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 PPIAP17-201ENST00000438507 471 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AL662791.1-201ENST00000441992 928 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 TPRKBP1-201ENST00000456243 481 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 RPL7P22-201ENST00000466005 733 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 RPL35AP15-201ENST00000468042 339 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC108729.2-201ENST00000476543 840 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC013356.1-201ENST00000489027 564 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC069499.1-201ENST00000489433 509 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC026979.1-201ENST00000492525 396 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC109458.1-201ENST00000508858 316 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 MTCO2P32-201ENST00000514865 403 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 SNORA76.2-201ENST00000517095 137 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 RNU6-1073P-201ENST00000517182 106 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 HIGD1AP6-201ENST00000521833 279 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AP000827.1-201ENST00000527814 258 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AC113368.1-201ENST00000603736 382 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 DPRXP5-201ENST00000604662 539 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AL590282.1-201ENST00000610379 1136 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 MIR6758-201ENST00000620653 63 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 MIR6830-201ENST00000636015 70 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 AL672296.1-201ENST00000427780 2158 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.9□□□□□ -1.79
ZNF540Q8NDQ6 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 RNU1-89P-201ENST00000384592 164 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 OFD1P18Y-201ENST00000420889 959 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 BMS1P19-201ENST00000433925 393 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms