Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIG1P18858 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
LIG1P18858 ADAM5-202ENST00000399789 1942 ntBASIC6.27□□□□□ -1.41
LIG1P18858 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIG1P18858 Y_RNA.25-201ENST00000362528 102 ntBASIC6.27□□□□□ -1.41
LIG1P18858 Y_RNA.279-201ENST00000364763 95 ntBASIC6.27□□□□□ -1.41
LIG1P18858 RNU6-1122P-201ENST00000384449 107 ntBASIC6.27□□□□□ -1.41
LIG1P18858 SNORD56.6-201ENST00000384569 71 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AC092642.1-201ENST00000392417 425 ntBASIC6.27□□□□□ -1.41
LIG1P18858 SNX10-203ENST00000409367 746 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG1P18858 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG1P18858 AL139128.1-201ENST00000413921 941 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC6.27□□□□□ -1.41
LIG1P18858 AL513174.1-201ENST00000423182 629 ntBASIC6.27□□□□□ -1.41
LIG1P18858 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG1P18858 NIPA2P1-201ENST00000426223 976 ntBASIC6.27□□□□□ -1.41
LIG1P18858 RPL7P4-203ENST00000430239 730 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG1P18858 SLC31A1P1-201ENST00000451221 567 ntBASIC6.27□□□□□ -1.41
LIG1P18858 CBX1P2-201ENST00000453841 458 ntBASIC6.27□□□□□ -1.41
LIG1P18858 ACTR3P3-201ENST00000480448 893 ntBASIC6.27□□□□□ -1.41
LIG1P18858 RN7SL273P-201ENST00000481561 299 ntBASIC6.27□□□□□ -1.41
LIG1P18858 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIG1P18858 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC6.27□□□□□ -1.41
LIG1P18858 AC114981.1-201ENST00000503897 678 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG1P18858 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG1P18858 AC105914.1-201ENST00000511798 226 ntBASIC6.27□□□□□ -1.41
LIG1P18858 RNU6-513P-201ENST00000516104 104 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG1P18858 FAM92A1P1-201ENST00000528023 890 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG1P18858 AL512310.1-201ENST00000548639 172 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG1P18858 AL359219.2-201ENST00000555184 348 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AL049872.1-201ENST00000556323 322 ntBASIC6.27□□□□□ -1.41
LIG1P18858 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG1P18858 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC6.27□□□□□ -1.41
LIG1P18858 AC011445.2-201ENST00000599274 173 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AC019193.2-201ENST00000610012 634 ntBASIC6.27□□□□□ -1.41
LIG1P18858 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG1P18858 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG1P18858 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
LIG1P18858 CROT-204ENST00000442291 1993 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG1P18858 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIG1P18858 OR13C1P-202ENST00000641378 2919 ntBASIC6.26□□□□□ -1.41
LIG1P18858 FARSBP1-201ENST00000435808 1778 ntBASIC6.26□□□□□ -1.41
LIG1P18858 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG1P18858 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
LIG1P18858 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 RNU4-73P-201ENST00000363164 141 ntBASIC6.26□□□□□ -1.41
LIG1P18858 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 RNU6-877P-201ENST00000383868 107 ntBASIC6.26□□□□□ -1.41
LIG1P18858 RNU6-1103P-201ENST00000384150 107 ntBASIC6.26□□□□□ -1.41
LIG1P18858 AC004690.1-201ENST00000418216 328 ntBASIC6.26□□□□□ -1.41
LIG1P18858 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG1P18858 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG1P18858 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.26□□□□□ -1.41
LIG1P18858 AC007677.1-201ENST00000445757 515 ntBASIC6.26□□□□□ -1.41
LIG1P18858 RPL7P59-201ENST00000447700 943 ntBASIC6.26□□□□□ -1.41
LIG1P18858 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 EIF3LP3-201ENST00000495197 822 ntBASIC6.26□□□□□ -1.41
LIG1P18858 AC023424.1-201ENST00000496058 459 ntBASIC6.26□□□□□ -1.41
LIG1P18858 AC090638.1-201ENST00000498296 909 ntBASIC6.26□□□□□ -1.41
LIG1P18858 MTND5P4-201ENST00000514978 288 ntBASIC6.26□□□□□ -1.41
LIG1P18858 HMGN1P9-201ENST00000515212 298 ntBASIC6.26□□□□□ -1.41
LIG1P18858 RNA5SP230-201ENST00000517039 122 ntBASIC6.26□□□□□ -1.41
LIG1P18858 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG1P18858 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG1P18858 AC141257.3-201ENST00000572906 215 ntBASIC6.26□□□□□ -1.41
LIG1P18858 AC005498.1-201ENST00000592125 465 ntBASIC6.26□□□□□ -1.41
LIG1P18858 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 AC090525.3-201ENST00000605601 189 ntBASIC6.26□□□□□ -1.41
LIG1P18858 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG1P18858 MIR4302-201ENST00000638058 60 ntBASIC6.26□□□□□ -1.41
LIG1P18858 AC073869.8-201ENST00000641806 335 ntBASIC6.26□□□□□ -1.41
LIG1P18858 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG1P18858 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
LIG1P18858 AC104260.2-201ENST00000623551 3497 ntBASIC6.26□□□□□ -1.41
LIG1P18858 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG1P18858 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG1P18858 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG1P18858 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.25□□□□□ -1.41
LIG1P18858 AC073136.1-201ENST00000449426 2884 ntBASIC6.25□□□□□ -1.41
LIG1P18858 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
LIG1P18858 AC021242.1-201ENST00000507315 2035 ntBASIC6.25□□□□□ -1.41
LIG1P18858 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG1P18858 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
LIG1P18858 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms