Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Gm37856-201ENSMUST00000191634 999 ntBASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ccdc28aQ8CEI3 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Gm12085-201ENSMUST00000119263 940 ntBASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ccdc28aQ8CEI3 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ccdc28aQ8CEI3 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Gm5643-201ENSMUST00000117081 966 ntBASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Gm38027-201ENSMUST00000192315 235 ntBASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Gm5297-201ENSMUST00000198555 1171 ntBASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ccdc28aQ8CEI3 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ccdc28aQ8CEI3 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ccdc28aQ8CEI3 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ccdc28aQ8CEI3 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms