Protein–RNA interactions for Protein: Q8CDD9

Lrif1, Ligand-dependent nuclear receptor-interacting factor 1, mousemouse

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lrif1Q8CDD9 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Gm11643-201ENSMUST00000119578 864 ntBASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Lrif1Q8CDD9 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Lrif1Q8CDD9 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Lrif1Q8CDD9 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Gm18025-201ENSMUST00000221733 862 ntBASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Mtag2-201ENSMUST00000058665 714 ntBASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Lrif1Q8CDD9 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 AC124581.1-201ENSMUST00000225416 1399 ntBASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Lrif1Q8CDD9 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Mir7071-201ENSMUST00000184847 69 ntBASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lrif1Q8CDD9 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms