Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col11a1Q61245 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col11a1Q61245 AC131709.1-201ENSMUST00000224731 1180 ntBASIC18.41■□□□□ 0.54
Col11a1Q61245 AC159295.1-201ENSMUST00000225326 940 ntBASIC18.41■□□□□ 0.54
Col11a1Q61245 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col11a1Q61245 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col11a1Q61245 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col11a1Q61245 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col11a1Q61245 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC18.4■□□□□ 0.54
Col11a1Q61245 Gm45167-201ENSMUST00000208007 322 ntBASIC18.4■□□□□ 0.54
Col11a1Q61245 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC18.4■□□□□ 0.54
Col11a1Q61245 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC18.4■□□□□ 0.54
Col11a1Q61245 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.4■□□□□ 0.54
Col11a1Q61245 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col11a1Q61245 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC18.39■□□□□ 0.54
Col11a1Q61245 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC18.39■□□□□ 0.54
Col11a1Q61245 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC18.39■□□□□ 0.54
Col11a1Q61245 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC18.39■□□□□ 0.54
Col11a1Q61245 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col11a1Q61245 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC18.39■□□□□ 0.54
Col11a1Q61245 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC18.39■□□□□ 0.54
Col11a1Q61245 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Col11a1Q61245 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC18.39■□□□□ 0.54
Col11a1Q61245 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Gm4899-201ENSMUST00000178708 719 ntBASIC18.39■□□□□ 0.53
Col11a1Q61245 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.39■□□□□ 0.53
Col11a1Q61245 AC155252.2-201ENSMUST00000226946 680 ntBASIC18.39■□□□□ 0.53
Col11a1Q61245 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col11a1Q61245 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Col11a1Q61245 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC18.38■□□□□ 0.53
Col11a1Q61245 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Col11a1Q61245 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.38■□□□□ 0.53
Col11a1Q61245 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col11a1Q61245 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.38■□□□□ 0.53
Col11a1Q61245 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Col11a1Q61245 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC18.37■□□□□ 0.53
Col11a1Q61245 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Col11a1Q61245 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
Col11a1Q61245 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC18.37■□□□□ 0.53
Col11a1Q61245 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC18.37■□□□□ 0.53
Col11a1Q61245 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col11a1Q61245 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC18.36■□□□□ 0.53
Col11a1Q61245 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
Col11a1Q61245 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Gm13332-201ENSMUST00000120451 1398 ntBASIC18.36■□□□□ 0.53
Col11a1Q61245 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Col11a1Q61245 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col11a1Q61245 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms