Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
Col6a1Q04857 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.19■□□□□ 0.5
Col6a1Q04857 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.19■□□□□ 0.5
Col6a1Q04857 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col6a1Q04857 Gm27867-201ENSMUST00000184778 125 ntBASIC18.19■□□□□ 0.5
Col6a1Q04857 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col6a1Q04857 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Col6a1Q04857 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Col6a1Q04857 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col6a1Q04857 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Gm32996-201ENSMUST00000199828 1447 ntBASIC18.18■□□□□ 0.5
Col6a1Q04857 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC18.18■□□□□ 0.5
Col6a1Q04857 Gm15165-201ENSMUST00000118140 502 ntBASIC18.18■□□□□ 0.5
Col6a1Q04857 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Col6a1Q04857 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.18■□□□□ 0.5
Col6a1Q04857 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Col6a1Q04857 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Col6a1Q04857 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Col6a1Q04857 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.18■□□□□ 0.5
Col6a1Q04857 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.18■□□□□ 0.5
Col6a1Q04857 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col6a1Q04857 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.17■□□□□ 0.5
Col6a1Q04857 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gm42670-201ENSMUST00000201816 1292 ntBASIC18.17■□□□□ 0.5
Col6a1Q04857 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.17■□□□□ 0.5
Col6a1Q04857 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col6a1Q04857 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Col6a1Q04857 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.16■□□□□ 0.5
Col6a1Q04857 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Idnk-204ENSMUST00000226010 1898 ntBASIC18.16■□□□□ 0.5
Col6a1Q04857 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC18.16■□□□□ 0.5
Col6a1Q04857 Gm27000-201ENSMUST00000182943 842 ntBASIC18.16■□□□□ 0.5
Col6a1Q04857 Mir8112-201ENSMUST00000184382 131 ntBASIC18.16■□□□□ 0.5
Col6a1Q04857 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col6a1Q04857 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.16■□□□□ 0.5
Col6a1Q04857 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 AC131586.3-201ENSMUST00000228355 1367 ntBASIC18.16■□□□□ 0.5
Col6a1Q04857 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a1Q04857 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a1Q04857 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a1Q04857 Phf7-203ENSMUST00000226565 1971 ntBASIC18.15■□□□□ 0.5
Col6a1Q04857 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a1Q04857 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a1Q04857 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a1Q04857 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a1Q04857 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.15■□□□□ 0.5
Col6a1Q04857 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms