Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.23□□□□□ -0.13
Nkx3-1P97436 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Nkx3-1P97436 AW822252-206ENSMUST00000208904 237 ntBASIC14.23□□□□□ -0.13
Nkx3-1P97436 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC14.23□□□□□ -0.13
Nkx3-1P97436 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Nkx3-1P97436 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Gm27867-201ENSMUST00000184778 125 ntBASIC14.22□□□□□ -0.13
Nkx3-1P97436 Gm44430-201ENSMUST00000203376 995 ntBASIC14.22□□□□□ -0.13
Nkx3-1P97436 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.22□□□□□ -0.13
Nkx3-1P97436 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Nkx3-1P97436 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 AL590614.2-201ENSMUST00000225374 1937 ntBASIC14.21□□□□□ -0.13
Nkx3-1P97436 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC14.21□□□□□ -0.13
Nkx3-1P97436 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Rps4l-201ENSMUST00000071745 943 ntBASIC14.21□□□□□ -0.13
Nkx3-1P97436 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Nkx3-1P97436 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC14.21□□□□□ -0.14
Nkx3-1P97436 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Nkx3-1P97436 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Nkx3-1P97436 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Nkx3-1P97436 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Nkx3-1P97436 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.21□□□□□ -0.14
Nkx3-1P97436 Gm45203-201ENSMUST00000206384 1831 ntBASIC14.2□□□□□ -0.14
Nkx3-1P97436 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Gm15165-201ENSMUST00000118140 502 ntBASIC14.2□□□□□ -0.14
Nkx3-1P97436 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Gm44454-201ENSMUST00000198541 138 ntBASIC14.2□□□□□ -0.14
Nkx3-1P97436 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.2□□□□□ -0.14
Nkx3-1P97436 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Nkx3-1P97436 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms