Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Sdc1P18828 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Sdc1P18828 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Sdc1P18828 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Gm26833-201ENSMUST00000180899 440 ntBASIC13.61□□□□□ -0.23
Sdc1P18828 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC13.61□□□□□ -0.23
Sdc1P18828 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC13.61□□□□□ -0.23
Sdc1P18828 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sdc1P18828 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
Sdc1P18828 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Sdc1P18828 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
Sdc1P18828 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Sdc1P18828 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC13.6□□□□□ -0.23
Sdc1P18828 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
Sdc1P18828 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
Sdc1P18828 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Sdc1P18828 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sdc1P18828 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Sdc1P18828 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
Sdc1P18828 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC13.59□□□□□ -0.23
Sdc1P18828 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Sdc1P18828 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sdc1P18828 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Sdc1P18828 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sdc1P18828 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sdc1P18828 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sdc1P18828 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sdc1P18828 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sdc1P18828 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 AC093043.1-201ENSMUST00000226700 898 ntBASIC13.58□□□□□ -0.24
Sdc1P18828 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.58□□□□□ -0.24
Sdc1P18828 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 AL590614.2-201ENSMUST00000225374 1937 ntBASIC13.58□□□□□ -0.24
Sdc1P18828 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sdc1P18828 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Sdc1P18828 Gm10655-201ENSMUST00000098658 1397 ntBASIC13.58□□□□□ -0.24
Sdc1P18828 Sybu-209ENSMUST00000228639 4113 ntBASIC13.57□□□□□ -0.24
Sdc1P18828 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Sdc1P18828 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Sdc1P18828 Mir2861-201ENSMUST00000175539 82 ntBASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms