Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Gm45560-201ENSMUST00000211492 1472 ntBASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Gm2559-201ENSMUST00000201323 363 ntBASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Trav11A0A0B4J1J9 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Gm10849-201ENSMUST00000100397 618 ntBASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC11.38□□□□□ -0.59
Trav11A0A0B4J1J9 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 AC107711.5-202ENSMUST00000226429 702 ntBASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Trav11A0A0B4J1J9 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Trav11A0A0B4J1J9 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms