Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 RFPL1S-203ENST00000539579 330 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.23□□□□□ -1.73
HNF4AP41235 AC004217.3-201ENST00000551552 878 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.23□□□□□ -1.73
HNF4AP41235 AC068790.4-201ENST00000602474 263 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AC007687.1-201ENST00000602704 304 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AC008745.1-201ENST00000604064 271 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 HMGN2P28-201ENST00000606102 262 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AL121652.1-201ENST00000608851 448 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AC012409.3-201ENST00000611343 981 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AL121890.3-201ENST00000618494 516 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 AC008993.2-201ENST00000631744 806 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.23□□□□□ -1.73
HNF4AP41235 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.23□□□□□ -1.73
HNF4AP41235 AC099654.9-201ENST00000637055 678 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.23□□□□□ -1.73
HNF4AP41235 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HNF4AP41235 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HNF4AP41235 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HNF4AP41235 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HNF4AP41235 AC139713.2-214ENST00000642059 1811 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.23□□□□□ -1.73
HNF4AP41235 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.23□□□□□ -1.73
HNF4AP41235 MFSD8-216ENST00000641147 4009 ntBASIC4.23□□□□□ -1.73
HNF4AP41235 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.22□□□□□ -1.73
HNF4AP41235 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.22□□□□□ -1.73
HNF4AP41235 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HNF4AP41235 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 RNA5SP447-201ENST00000363749 119 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HNF4AP41235 MIR1911-201ENST00000410783 80 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.22□□□□□ -1.73
HNF4AP41235 UBE2V1P9-201ENST00000414760 368 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 RAC1P3-201ENST00000416129 580 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 EI24P1-201ENST00000416584 867 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 RBMY1KP-201ENST00000423480 476 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.22□□□□□ -1.73
HNF4AP41235 DNAJC19P7-201ENST00000428811 344 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 RPS27AP12-201ENST00000429552 465 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 Z80107.1-201ENST00000436830 412 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 HMGN3P1-201ENST00000453847 193 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 DHFRP3-201ENST00000455595 559 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.22□□□□□ -1.73
HNF4AP41235 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.22□□□□□ -1.73
HNF4AP41235 PRELID3BP6-201ENST00000503839 571 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.22□□□□□ -1.73
HNF4AP41235 ATP1B1P1-201ENST00000509767 915 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.22□□□□□ -1.73
HNF4AP41235 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.22□□□□□ -1.73
HNF4AP41235 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.22□□□□□ -1.73
HNF4AP41235 IGLV3-26-201ENST00000520756 302 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.22□□□□□ -1.73
HNF4AP41235 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.22□□□□□ -1.73
HNF4AP41235 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.22□□□□□ -1.73
HNF4AP41235 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.22□□□□□ -1.73
HNF4AP41235 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.22□□□□□ -1.73
HNF4AP41235 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.22□□□□□ -1.73
HNF4AP41235 MIR4700-201ENST00000578311 74 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HNF4AP41235 RN7SL622P-201ENST00000585292 275 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 OR4G1P-201ENST00000588632 938 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.22□□□□□ -1.73
HNF4AP41235 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.22□□□□□ -1.73
HNF4AP41235 AP002906.1-201ENST00000603405 233 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AP004247.3-201ENST00000608682 624 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 RMST_9.1-201ENST00000619945 193 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HNF4AP41235 AC007275.1-201ENST00000621243 671 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AC019278.1-201ENST00000623516 479 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 AP003476.1-201ENST00000623984 516 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HNF4AP41235 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HNF4AP41235 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HNF4AP41235 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.22□□□□□ -1.73
HNF4AP41235 ZNF849P-201ENST00000594711 1566 ntBASIC4.22□□□□□ -1.73
HNF4AP41235 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
HNF4AP41235 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
HNF4AP41235 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.21□□□□□ -1.74
HNF4AP41235 AC008033.1-201ENST00000216407 1162 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
HNF4AP41235 SNORA31-201ENST00000362607 130 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 U3.22-201ENST00000391120 215 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC4.21□□□□□ -1.74
HNF4AP41235 AC245028.1-201ENST00000423259 256 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 EIF1P3-201ENST00000423841 334 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 COX6CP15-201ENST00000426313 211 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.21□□□□□ -1.74
HNF4AP41235 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.21□□□□□ -1.74
HNF4AP41235 CNOT7P1-201ENST00000429006 852 ntBASIC4.21□□□□□ -1.74
HNF4AP41235 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms