Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL18A1P39060 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.29□□□□□ -1.72
COL18A1P39060 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.29□□□□□ -1.72
COL18A1P39060 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.29□□□□□ -1.72
COL18A1P39060 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL18A1P39060 RNU6-7-201ENST00000364784 107 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 RNU6-8-201ENST00000365467 107 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL18A1P39060 BX890604.2-201ENST00000427883 474 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 PTP4A1P3-201ENST00000433661 420 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL18A1P39060 CCDC75P1-201ENST00000469247 791 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.29□□□□□ -1.72
COL18A1P39060 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.29□□□□□ -1.72
COL18A1P39060 AL121576.1-201ENST00000556055 276 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 AC106785.3-201ENST00000564064 847 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 MIR3945-201ENST00000581853 98 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.29□□□□□ -1.72
COL18A1P39060 uc_338.25-201ENST00000613756 156 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC4.29□□□□□ -1.72
COL18A1P39060 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
COL18A1P39060 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.29□□□□□ -1.72
COL18A1P39060 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL18A1P39060 AC139713.2-215ENST00000641428 5037 ntBASIC4.29□□□□□ -1.72
COL18A1P39060 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
COL18A1P39060 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 AC083843.2-201ENST00000568248 6253 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.28□□□□□ -1.72
COL18A1P39060 SNORA5B-201ENST00000363786 132 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 RNA5SP39-201ENST00000411245 120 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 AC007899.1-201ENST00000412776 775 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.28□□□□□ -1.72
COL18A1P39060 RNA5SP356-201ENST00000515972 94 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.28□□□□□ -1.72
COL18A1P39060 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.28□□□□□ -1.72
COL18A1P39060 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.28□□□□□ -1.72
COL18A1P39060 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.28□□□□□ -1.72
COL18A1P39060 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.28□□□□□ -1.72
COL18A1P39060 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.28□□□□□ -1.72
COL18A1P39060 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 AL672296.1-201ENST00000427780 2158 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL18A1P39060 AC017071.1-201ENST00000564407 2204 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL18A1P39060 AC018555.1-201ENST00000567548 1980 ntBASIC4.28□□□□□ -1.72
COL18A1P39060 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL18A1P39060 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL18A1P39060 RNA5SP104-201ENST00000410989 118 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC012065.2-201ENST00000421295 375 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.27□□□□□ -1.73
COL18A1P39060 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL18A1P39060 OR2A20P-203ENST00000498397 1268 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 ASNSP4-201ENST00000511103 447 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC026801.2-201ENST00000515352 425 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC135001.1-201ENST00000544546 283 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.27□□□□□ -1.73
COL18A1P39060 AC233702.9-201ENST00000581528 203 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC104984.5-201ENST00000586878 94 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.27□□□□□ -1.73
COL18A1P39060 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.27□□□□□ -1.73
COL18A1P39060 AL596275.2-204ENST00000641628 552 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AL596275.2-206ENST00000641957 626 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.27□□□□□ -1.73
COL18A1P39060 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
COL18A1P39060 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.27□□□□□ -1.73
COL18A1P39060 AC011503.2-201ENST00000594230 1500 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 OR5AQ1P-203ENST00000641818 1529 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 AC005261.6-201ENST00000623072 1387 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.27□□□□□ -1.73
COL18A1P39060 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.27□□□□□ -1.73
COL18A1P39060 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL18A1P39060 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
COL18A1P39060 SNORD67-201ENST00000390833 111 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 SNORA48.8-201ENST00000391324 134 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 EEF1A1P41-201ENST00000414667 207 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL18A1P39060 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.27□□□□□ -1.73
COL18A1P39060 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.27□□□□□ -1.73
COL18A1P39060 MIR3162-201ENST00000581818 82 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
COL18A1P39060 AL359757.2-201ENST00000624309 274 ntBASIC4.27□□□□□ -1.73
COL18A1P39060 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.27□□□□□ -1.73
COL18A1P39060 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
COL18A1P39060 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
COL18A1P39060 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
COL18A1P39060 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
COL18A1P39060 NR1H5P-201ENST00000452683 1377 ntBASIC4.26□□□□□ -1.73
COL18A1P39060 AC017007.4-201ENST00000503353 1352 ntBASIC4.26□□□□□ -1.73
COL18A1P39060 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL18A1P39060 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.26□□□□□ -1.73
COL18A1P39060 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC4.26□□□□□ -1.73
COL18A1P39060 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms