Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC135001.1-201ENST00000544546 283 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC004217.3-201ENST00000551552 878 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC023575.1-201ENST00000580510 358 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 KPNA2P3-201ENST00000584190 848 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC008687.2-201ENST00000597865 520 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC105429.2-201ENST00000610567 517 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AL138478.1-201ENST00000612252 832 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC234782.5-201ENST00000617723 324 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC011330.2-201ENST00000621680 635 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC140113.4-201ENST00000622087 222 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC004943.3-201ENST00000624116 600 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC008758.3-201ENST00000507003 1829 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC139713.2-214ENST00000642059 1811 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 XIAPP3-201ENST00000312918 795 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 snoZ40.1-201ENST00000364540 72 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RNU6-707P-201ENST00000364647 95 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 SNORA51.12-201ENST00000384448 134 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 MIR921-201ENST00000401133 56 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RNU2-65P-201ENST00000410162 185 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RNA5SP113-201ENST00000410486 84 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RNA5SP345-201ENST00000410646 108 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AL356320.2-201ENST00000417263 507 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 Z75741.2-201ENST00000417272 1167 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 GTF2IP23-201ENST00000423746 351 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC008065.1-201ENST00000428525 348 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 MTCO1P3-201ENST00000429327 192 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 YWHAZP8-201ENST00000436935 731 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RPL7P11-201ENST00000437586 658 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC004938.1-201ENST00000438468 308 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 PPIAP17-201ENST00000438507 471 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC073587.1-201ENST00000447093 876 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 COX6CP18-201ENST00000448769 222 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 snoU13.24-201ENST00000458998 104 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC096992.1-201ENST00000459808 709 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RPL23AP44-201ENST00000482216 473 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 ARL4AP1-201ENST00000503220 705 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC018797.3-201ENST00000513388 1241 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 RGS5-219ENST00000528019 512 ntTSL 4 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 OR4C2P-201ENST00000530855 1064 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 LRRC34P1-201ENST00000542742 915 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC069366.1-201ENST00000583159 838 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC022022.2-201ENST00000602989 360 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 LLPHP1-201ENST00000603571 367 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC105254.2-201ENST00000603636 436 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC004825.2-201ENST00000616634 455 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC109809.1-201ENST00000619665 545 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 AC011944.2-201ENST00000624440 683 ntBASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.92□□□□□ -1.78
PDLIM3Q53GG5 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms