Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 RNU1-140P-201ENST00000365040 165 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 ZNF603P-201ENST00000405613 487 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 OR1AA1P-201ENST00000419597 916 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AL160175.1-201ENST00000428124 247 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 NPM1P39-201ENST00000449818 867 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AC099563.1-201ENST00000456086 418 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AL163642.2-201ENST00000604722 1019 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 DDX6P1-205ENST00000441966 1436 ntBASIC4.27□□□□□ -1.73
CCDC88AQ3V6T2 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 RNU1-18P-201ENST00000363062 164 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AL024507.1-201ENST00000412741 274 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AC063979.1-201ENST00000415539 377 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 IFNNP1-201ENST00000429219 553 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 PTP4A1P3-201ENST00000433661 420 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AC233982.1-201ENST00000451247 436 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 SYT14P1-201ENST00000481459 721 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 RNU6-579P-201ENST00000516879 102 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AL451007.1-201ENST00000595491 289 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 RMST_9.1-201ENST00000619945 193 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AP003355.3-201ENST00000623465 114 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 BMS1P21-201ENST00000634565 365 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AC074367.1-201ENST00000438685 1125 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 SEPT7P3-201ENST00000455017 621 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 FCF1P8-201ENST00000510322 597 ntBASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC88AQ3V6T2 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 MTHFD2P2-201ENST00000407725 247 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 AC093698.1-201ENST00000423843 571 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 RPL23AP69-201ENST00000431134 458 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 NPM1P48-201ENST00000436002 853 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 FCF1P3-201ENST00000496394 590 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 SUMO2P4-201ENST00000504193 276 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 AC006539.2-201ENST00000601729 572 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 AL645937.1-201ENST00000641739 1652 ntBASIC4.25□□□□□ -1.73
CCDC88AQ3V6T2 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 RNU6-249P-201ENST00000363016 102 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 U3.44-201ENST00000458938 192 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 OR2A20P-203ENST00000498397 1268 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 BTF3L4P4-201ENST00000506381 449 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 GOLGA5P1-201ENST00000507317 980 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 IGKV2-26-201ENST00000518305 343 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC093732.2-201ENST00000607950 274 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC105227.2-201ENST00000615075 605 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 RNA5SP80-201ENST00000410475 111 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 NPM1P17-201ENST00000479221 602 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 RPL7P38-201ENST00000488396 739 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC027281.1-201ENST00000574178 758 ntBASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC88AQ3V6T2 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms