Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MIR3908-201ENST00000579798 126 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 SLC25A36P1-201ENST00000590111 465 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC095038.2-201ENST00000621464 1070 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AF001550.2-201ENST00000636643 217 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 BCLAF1P2-201ENST00000624956 2609 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 ATF1P1-201ENST00000406040 927 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AL158050.1-201ENST00000416077 457 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AL512661.1-201ENST00000434586 1253 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 RN7SL293P-201ENST00000481765 281 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC063950.1-201ENST00000552036 308 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC104229.1-201ENST00000561364 255 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC015911.5-201ENST00000587076 451 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 MTATP6P2-201ENST00000603319 678 ntBASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
SHROOM4Q9ULL8 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AC118273.1-201ENST00000525324 3006 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 U1.1-201ENST00000384101 164 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 RNU6-603P-201ENST00000411403 107 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 MTCO1P43-201ENST00000431831 488 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 RN7SL323P-201ENST00000494712 295 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AC010285.3-201ENST00000511668 676 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 RN7SKP13-201ENST00000515933 244 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 RN7SKP46-201ENST00000515942 234 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AC106785.3-201ENST00000564064 847 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AL391497.1-201ENST00000608671 547 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 AC138965.3-201ENST00000623875 498 ntBASIC7.61□□□□□ -1.19
SHROOM4Q9ULL8 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 RNVU1-14-201ENST00000384770 164 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 U3.23-201ENST00000391132 200 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 AL359643.1-201ENST00000404109 423 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 AC008173.1-201ENST00000418901 264 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 TPMTP4-201ENST00000450749 678 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 AL133162.1-201ENST00000463228 453 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 RN7SL601P-201ENST00000471221 293 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 RNU7-143P-201ENST00000516781 65 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 RERGL-202ENST00000536890 367 ntTSL 3 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 MIR8084-201ENST00000614105 89 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 AC055839.1-201ENST00000634467 498 ntBASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
SHROOM4Q9ULL8 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 MIR92A2-201ENST00000385299 75 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 RNU6-796P-201ENST00000391086 107 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 UBTFL3-201ENST00000418934 1024 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 CYCSP20-201ENST00000473154 315 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 UBTFL6-201ENST00000477929 1024 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 RPL21P47-201ENST00000483696 477 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 GTF2IP8-201ENST00000560687 584 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 AC027104.1-201ENST00000563702 681 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 AL451044.1-201ENST00000604867 238 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 AC245100.7-201ENST00000609678 442 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 AC097505.1-201ENST00000610199 565 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 RMST_10.1-201ENST00000616309 154 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 AP000943.4-201ENST00000622912 357 ntBASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
SHROOM4Q9ULL8 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
SHROOM4Q9ULL8 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms