Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AP000916.1-201ENST00000533869 835 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AGGF1P6-201ENST00000569213 976 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC120057.2-201ENST00000571520 271 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 NTAN1P1-201ENST00000603150 646 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC233280.2-201ENST00000603917 1070 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC091167.4-201ENST00000605079 184 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AL158211.2-201ENST00000607282 395 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC024941.1-201ENST00000612250 334 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 BMS1P21-201ENST00000634565 365 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 AC007529.1-201ENST00000418574 2178 ntBASIC4.03□□□□□ -1.76
LHX3Q9UBR4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
LHX3Q9UBR4 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.03□□□□□ -1.77
LHX3Q9UBR4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
LHX3Q9UBR4 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 RN7SKP280-201ENST00000364196 304 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 SNORA57.1-201ENST00000391227 145 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AL356967.1-201ENST00000406305 431 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 SNORA3C-201ENST00000408792 125 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 RNU2-65P-201ENST00000410162 185 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AL445183.3-201ENST00000414168 502 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 RPL30P3-201ENST00000424262 333 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC083863.1-201ENST00000438811 231 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 NDUFA5P2-201ENST00000519723 344 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC087369.1-201ENST00000520775 996 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC022790.1-201ENST00000522872 204 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC010306.1-201ENST00000523223 1117 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 C1DP5-201ENST00000525775 383 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 PDCD5P1-201ENST00000543528 309 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC053481.4-201ENST00000583164 216 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC098483.2-201ENST00000603158 454 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AL592436.1-201ENST00000605135 558 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC124312.6-202ENST00000623624 418 ntBASIC4.02□□□□□ -1.77
LHX3Q9UBR4 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.02□□□□□ -1.77
LHX3Q9UBR4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 RNU6-481P-201ENST00000384194 107 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 MIR1251-201ENST00000408552 70 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 MTND2P15-201ENST00000418575 892 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 HIGD1AP4-201ENST00000430194 280 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 VN1R25P-201ENST00000443385 738 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 VN1R40P-201ENST00000455196 941 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 RPL31P61-201ENST00000496160 376 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 OR5H3P-201ENST00000502817 919 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AC010460.1-201ENST00000507087 466 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AC121161.1-201ENST00000510606 652 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 ATP5F1P7-201ENST00000567330 760 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.01□□□□□ -1.77
LHX3Q9UBR4 AC090312.2-201ENST00000582687 378 ntBASIC4.01□□□□□ -1.77
LHX3Q9UBR4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms