Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ATG4AP1-201ENST00000416893 538 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC019178.2-201ENST00000423595 505 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 FTLP19-201ENST00000433300 394 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AP000936.3-201ENST00000438127 255 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 GTF3AP5-201ENST00000442645 697 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC022431.1-201ENST00000450941 438 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 RPL30P6-201ENST00000475925 342 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 RN7SL132P-201ENST00000478131 296 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC048346.1-201ENST00000510247 144 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC006499.6-201ENST00000511169 607 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 GAPDHP62-201ENST00000515313 990 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC008562.1-201ENST00000521763 330 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 REXO2-218ENST00000544827 880 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC004223.4-201ENST00000612426 332 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC005858.4-201ENST00000623191 700 ntBASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SMC1BQ8NDV3 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 RNU6-623P-201ENST00000363143 105 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 SNORA77-201ENST00000408716 125 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 BTF3L4P1-201ENST00000413813 468 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AL161449.1-201ENST00000414531 1199 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC091390.3-201ENST00000426478 338 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC096638.2-201ENST00000434965 711 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC016772.1-201ENST00000444170 1261 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC015724.1-201ENST00000478577 156 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 MTND5P13-201ENST00000513046 1079 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 RNA5SP135-201ENST00000517019 125 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC022360.1-201ENST00000521058 340 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 NAP1L1P1-201ENST00000524793 1063 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC023161.2-201ENST00000551218 780 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC017100.2-201ENST00000584628 355 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 IPO5P1-202ENST00000600039 287 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC009237.13-201ENST00000603193 276 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AL390816.3-201ENST00000604527 1066 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC007497.1-201ENST00000610421 561 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC007786.3-201ENST00000615154 596 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 FP325313.1-201ENST00000638228 703 ntBASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SMC1BQ8NDV3 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
SMC1BQ8NDV3 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
SMC1BQ8NDV3 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms