Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AL161713.1-201ENST00000555538 145 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC090877.1-201ENST00000561418 344 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 MIR5047-201ENST00000579212 100 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 MIR1254-2-201ENST00000579553 63 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC093227.2-201ENST00000589357 285 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 EIF1P6-201ENST00000600054 334 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 IGKV1OR2-118-201ENST00000603238 347 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AL606490.9-201ENST00000603331 271 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HLA-DMBP28068 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HLA-DMBP28068 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HLA-DMBP28068 CASC19-261ENST00000641853 1638 ntBASIC2.93□□□□□ -1.94
HLA-DMBP28068 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC2.93□□□□□ -1.94
HLA-DMBP28068 PRO1804-201ENST00000623780 2050 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HLA-DMBP28068 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HLA-DMBP28068 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HLA-DMBP28068 RNU1-18P-201ENST00000363062 164 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 ATP5F1P4-201ENST00000397288 746 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 HSPE1P8-201ENST00000406997 288 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 SNORA11-201ENST00000408789 128 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 NAP1L1P2-201ENST00000414182 1089 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC122718.1-201ENST00000439448 744 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AL157884.3-201ENST00000448273 1184 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 RPL31P53-201ENST00000457065 348 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 RN7SL93P-201ENST00000463035 293 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 RPL9P32-201ENST00000464118 620 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 FAM133DP-201ENST00000464802 691 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 RN7SL132P-201ENST00000478131 296 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 RPS4XP15-201ENST00000489210 795 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 AL133372.1-201ENST00000493565 745 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC010460.1-201ENST00000507087 466 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 YPEL5P3-201ENST00000547227 352 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 NPM1P47-201ENST00000560843 856 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC053481.4-201ENST00000583164 216 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC022916.3-201ENST00000592961 742 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 AC012531.5-201ENST00000611375 151 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 uc_338.9-201ENST00000617424 182 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 AL139089.1-201ENST00000620372 975 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 ATE1-AS1-202ENST00000636460 506 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 LINC00561-201ENST00000565815 2738 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HLA-DMBP28068 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
HLA-DMBP28068 TNPO1P3-201ENST00000436471 2662 ntBASIC2.92□□□□□ -1.94
HLA-DMBP28068 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HLA-DMBP28068 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.92□□□□□ -1.94
HLA-DMBP28068 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HLA-DMBP28068 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC2.91□□□□□ -1.94
HLA-DMBP28068 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC2.91□□□□□ -1.94
HLA-DMBP28068 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
HLA-DMBP28068 USP8P1-201ENST00000494673 3183 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HLA-DMBP28068 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC2.91□□□□□ -1.94
HLA-DMBP28068 RN7SKP280-201ENST00000364196 304 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
HLA-DMBP28068 HLFP1-201ENST00000402375 499 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 RN7SKP27-201ENST00000410684 333 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC2.91□□□□□ -1.94
HLA-DMBP28068 SAGE2P-201ENST00000420011 2126 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC2.91□□□□□ -1.94
HLA-DMBP28068 OR8F1P-201ENST00000425243 930 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 Z74696.2-201ENST00000436514 498 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 AC092809.1-201ENST00000441469 474 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 AC239367.2-201ENST00000447309 705 ntBASIC2.91□□□□□ -1.94
HLA-DMBP28068 AL359073.1-201ENST00000448036 403 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms