Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.83□□□□□ -1.48
HMGB1P09429 AC000374.1-201ENST00000434698 1745 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.82□□□□□ -1.48
HMGB1P09429 AL731532.2-201ENST00000623542 1953 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HMGB1P09429 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HMGB1P09429 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
HMGB1P09429 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
HMGB1P09429 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.82□□□□□ -1.48
HMGB1P09429 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HMGB1P09429 RNA5SP305-201ENST00000362665 119 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
HMGB1P09429 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HMGB1P09429 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.82□□□□□ -1.48
HMGB1P09429 RPS7P15-201ENST00000415804 584 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 RPL7P44-201ENST00000424827 742 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC5.82□□□□□ -1.48
HMGB1P09429 RHOT1P3-201ENST00000436571 331 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AC092427.1-201ENST00000439177 601 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.82□□□□□ -1.48
HMGB1P09429 BTF3P5-201ENST00000457252 467 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 RNA5SP103-201ENST00000459503 118 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 RPL23AP44-201ENST00000482216 473 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.82□□□□□ -1.48
HMGB1P09429 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.82□□□□□ -1.48
HMGB1P09429 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.82□□□□□ -1.48
HMGB1P09429 AC004062.1-201ENST00000509926 645 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 RNU6-27P-201ENST00000516146 107 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC5.82□□□□□ -1.48
HMGB1P09429 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.82□□□□□ -1.48
HMGB1P09429 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.82□□□□□ -1.48
HMGB1P09429 MIR3691-201ENST00000578066 90 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AC015688.2-201ENST00000584523 262 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AC091057.3-201ENST00000602684 733 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AP001521.2-201ENST00000608772 546 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AL157392.4-201ENST00000609756 345 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AL445423.1-201ENST00000609941 536 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AL590282.1-201ENST00000610379 1136 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AL138478.1-201ENST00000612252 832 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AC006963.1-201ENST00000624003 1052 ntBASIC5.82□□□□□ -1.48
HMGB1P09429 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC5.82□□□□□ -1.48
HMGB1P09429 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HMGB1P09429 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.82□□□□□ -1.48
HMGB1P09429 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HMGB1P09429 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
HMGB1P09429 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HMGB1P09429 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.81□□□□□ -1.48
HMGB1P09429 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.81□□□□□ -1.48
HMGB1P09429 AC004925.1-201ENST00000624256 2706 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
HMGB1P09429 EXOC5P1-201ENST00000510543 1969 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 NACA3P-201ENST00000359690 648 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AL121834.1-202ENST00000404494 277 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 BMS1P13-201ENST00000417301 885 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC5.81□□□□□ -1.48
HMGB1P09429 AC092647.3-201ENST00000443044 633 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AC073850.1-201ENST00000449243 255 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 RFC5P1-201ENST00000454419 874 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 RN7SL629P-201ENST00000489622 285 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.81□□□□□ -1.48
HMGB1P09429 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC5.81□□□□□ -1.48
HMGB1P09429 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.81□□□□□ -1.48
HMGB1P09429 RN7SKP147-201ENST00000517154 244 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 RN7SKP289-201ENST00000517244 295 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.81□□□□□ -1.48
HMGB1P09429 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.81□□□□□ -1.48
HMGB1P09429 AC090281.1-201ENST00000523019 276 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC5.81□□□□□ -1.48
HMGB1P09429 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.81□□□□□ -1.48
HMGB1P09429 AC012182.1-201ENST00000570133 895 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC5.81□□□□□ -1.48
HMGB1P09429 BNIP3P39-201ENST00000601077 554 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC5.81□□□□□ -1.48
HMGB1P09429 AL512624.1-201ENST00000613638 469 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 CYCSP41-201ENST00000616920 296 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AL121895.2-201ENST00000619558 447 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 AP002799.1-201ENST00000623552 423 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 CR381572.2-201ENST00000624852 397 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.81□□□□□ -1.48
HMGB1P09429 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HMGB1P09429 AC009643.2-201ENST00000603543 1448 ntBASIC5.81□□□□□ -1.48
HMGB1P09429 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
HMGB1P09429 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 AL672167.1-204ENST00000641875 3017 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 SCN1A-220ENST00000641603 12506 ntBASIC5.8□□□□□ -1.48
HMGB1P09429 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC5.8□□□□□ -1.48
HMGB1P09429 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HMGB1P09429 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HMGB1P09429 AL022393.1-201ENST00000625142 1677 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms