Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SHOX2O60902 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SHOX2O60902 SNORA73.2-201ENST00000364946 201 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 SNORD6-201ENST00000365444 73 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.8□□□□□ -1.8
SHOX2O60902 RPS3AP23-201ENST00000401762 784 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.8□□□□□ -1.8
SHOX2O60902 AIMP1P1-201ENST00000418670 937 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 GLRXP1-201ENST00000423261 334 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.8□□□□□ -1.8
SHOX2O60902 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.8□□□□□ -1.8
SHOX2O60902 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.8□□□□□ -1.8
SHOX2O60902 HMGB3P14-201ENST00000494195 599 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.8□□□□□ -1.8
SHOX2O60902 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC3.8□□□□□ -1.8
SHOX2O60902 AC008958.1-201ENST00000511047 682 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 FTH1P9-201ENST00000513251 355 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 CCNHP1-201ENST00000513311 678 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.8□□□□□ -1.8
SHOX2O60902 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.8□□□□□ -1.8
SHOX2O60902 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.8□□□□□ -1.8
SHOX2O60902 AC115621.1-201ENST00000604653 858 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.8□□□□□ -1.8
SHOX2O60902 AC011816.2-201ENST00000607089 556 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.8□□□□□ -1.8
SHOX2O60902 AC009318.3-201ENST00000616916 503 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 AC079684.1-201ENST00000621405 437 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.8□□□□□ -1.8
SHOX2O60902 AL139254.3-201ENST00000641097 674 ntBASIC3.8□□□□□ -1.8
SHOX2O60902 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.8□□□□□ -1.8
SHOX2O60902 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SHOX2O60902 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SHOX2O60902 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.79□□□□□ -1.8
SHOX2O60902 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHOX2O60902 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHOX2O60902 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.79□□□□□ -1.8
SHOX2O60902 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHOX2O60902 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHOX2O60902 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHOX2O60902 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SHOX2O60902 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC3.79□□□□□ -1.8
SHOX2O60902 AL049610.1-201ENST00000423374 372 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.79□□□□□ -1.8
SHOX2O60902 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.79□□□□□ -1.8
SHOX2O60902 AL392003.1-201ENST00000434394 243 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.79□□□□□ -1.8
SHOX2O60902 RPL7P31-201ENST00000450192 724 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.79□□□□□ -1.8
SHOX2O60902 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.79□□□□□ -1.8
SHOX2O60902 HMGB3P21-201ENST00000452483 547 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AL645939.1-201ENST00000453429 797 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 RPL23AP24-201ENST00000458203 385 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 SEPT7P6-201ENST00000469999 1143 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 RN7SL810P-201ENST00000493031 276 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 RAC1P2-201ENST00000511164 579 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AC108471.1-201ENST00000513977 287 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AC099522.1-202ENST00000514718 367 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.79□□□□□ -1.8
SHOX2O60902 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SHOX2O60902 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC3.79□□□□□ -1.8
SHOX2O60902 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.79□□□□□ -1.8
SHOX2O60902 YPEL5P3-201ENST00000547227 352 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC3.79□□□□□ -1.8
SHOX2O60902 MIR4716-201ENST00000579628 84 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.79□□□□□ -1.8
SHOX2O60902 AC007423.1-201ENST00000605009 627 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 AL357559.1-201ENST00000622228 274 ntBASIC3.79□□□□□ -1.8
SHOX2O60902 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.79□□□□□ -1.8
SHOX2O60902 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.78□□□□□ -1.8
SHOX2O60902 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
SHOX2O60902 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SHOX2O60902 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SHOX2O60902 IGKV7-3-201ENST00000357453 298 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 RNA5SP447-201ENST00000363749 119 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.78□□□□□ -1.8
SHOX2O60902 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC048351.1-201ENST00000420064 602 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 BX890604.2-201ENST00000427883 474 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AP000907.1-201ENST00000428428 510 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 RPS29P17-201ENST00000430795 166 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 MTCYBP29-201ENST00000436327 1006 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SHOX2O60902 AC125238.1-201ENST00000448842 249 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 RPS20P4-201ENST00000461659 355 ntBASIC3.78□□□□□ -1.8
SHOX2O60902 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.78□□□□□ -1.8
SHOX2O60902 AC013356.1-201ENST00000489027 564 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms