Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RPS4XP2-201ENST00000458402 793 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A4P53420 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC3.87□□□□□ -1.79
COL4A4P53420 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A4P53420 RNU6-751P-201ENST00000516382 101 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 Vault.1-201ENST00000516474 102 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 RN7SKP209-201ENST00000516888 304 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 AC008489.1-201ENST00000524271 483 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
COL4A4P53420 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A4P53420 MIR7112-201ENST00000616126 65 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A4P53420 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A4P53420 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A4P53420 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC3.87□□□□□ -1.79
COL4A4P53420 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A4P53420 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A4P53420 RNA5SP197-201ENST00000363357 119 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A4P53420 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
COL4A4P53420 SNORD17-201ENST00000390930 237 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 RNA5SP424-201ENST00000390988 115 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 UBA52P6-201ENST00000399822 382 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 DPPA2P2-201ENST00000418220 897 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A4P53420 RNF19BPX-201ENST00000426224 625 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A4P53420 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A4P53420 AC006480.1-201ENST00000449887 378 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 RPL32P34-201ENST00000486380 400 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 TRBV12-2-201ENST00000489763 344 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A4P53420 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.87□□□□□ -1.79
COL4A4P53420 EIF1P6-201ENST00000600054 334 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 AL021368.1-201ENST00000607490 540 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 AC020658.4-201ENST00000613987 684 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 AC008147.4-201ENST00000617570 1204 ntBASIC3.87□□□□□ -1.79
COL4A4P53420 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A4P53420 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A4P53420 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
COL4A4P53420 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
COL4A4P53420 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 RNU6-301P-201ENST00000384277 107 ntBASIC3.86□□□□□ -1.79
COL4A4P53420 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A4P53420 AC245054.1-201ENST00000420944 258 ntBASIC3.86□□□□□ -1.79
COL4A4P53420 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.86□□□□□ -1.79
COL4A4P53420 MTND6P32-201ENST00000457611 483 ntBASIC3.86□□□□□ -1.79
COL4A4P53420 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A4P53420 AC080014.1-201ENST00000496877 1201 ntBASIC3.86□□□□□ -1.79
COL4A4P53420 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC3.86□□□□□ -1.79
COL4A4P53420 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC3.86□□□□□ -1.79
COL4A4P53420 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.86□□□□□ -1.79
COL4A4P53420 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A4P53420 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A4P53420 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.86□□□□□ -1.79
COL4A4P53420 AL713922.2-201ENST00000619384 716 ntBASIC3.86□□□□□ -1.79
COL4A4P53420 AC048344.4-201ENST00000619744 527 ntBASIC3.86□□□□□ -1.79
COL4A4P53420 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 AL133383.2-201ENST00000622958 2336 ntBASIC3.86□□□□□ -1.79
COL4A4P53420 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL4A4P53420 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC3.85□□□□□ -1.79
COL4A4P53420 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL4A4P53420 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 HMGB3P20-201ENST00000417997 600 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 NDUFB1P1-201ENST00000435191 180 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 TPTE2P1-204ENST00000435256 593 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A4P53420 AC096576.1-201ENST00000489014 359 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.85□□□□□ -1.79
COL4A4P53420 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC3.85□□□□□ -1.79
COL4A4P53420 MTND2P31-201ENST00000512602 616 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.85□□□□□ -1.79
COL4A4P53420 RNU6-362P-201ENST00000516736 90 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A4P53420 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.85□□□□□ -1.79
COL4A4P53420 AC004223.2-201ENST00000590309 544 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 KLKP1-201ENST00000595979 403 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 AC068313.1-201ENST00000604028 1008 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 U4.6-201ENST00000621618 127 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 AL359715.5-201ENST00000623431 443 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 AC026422.1-201ENST00000623961 452 ntBASIC3.85□□□□□ -1.79
COL4A4P53420 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC3.85□□□□□ -1.79
COL4A4P53420 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
COL4A4P53420 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.85□□□□□ -1.79
COL4A4P53420 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
COL4A4P53420 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms