Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.32□□□□□ -1.72
MSH3P20585 AC068587.2-201ENST00000478386 781 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC134050.1-201ENST00000495088 933 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC005912.1-201ENST00000495392 255 ntBASIC4.32□□□□□ -1.72
MSH3P20585 RPL21P131-201ENST00000497298 483 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC006499.6-201ENST00000511169 607 ntBASIC4.32□□□□□ -1.72
MSH3P20585 RN7SKP287-201ENST00000516546 266 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC104417.1-201ENST00000523974 751 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.32□□□□□ -1.72
MSH3P20585 NDUFS5P6-201ENST00000529136 295 ntBASIC4.32□□□□□ -1.72
MSH3P20585 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 AL352979.3-201ENST00000553515 247 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC068831.4-201ENST00000556118 109 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.32□□□□□ -1.72
MSH3P20585 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC4.32□□□□□ -1.72
MSH3P20585 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 ATP5F1P7-201ENST00000567330 760 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.32□□□□□ -1.72
MSH3P20585 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.32□□□□□ -1.72
MSH3P20585 AL357094.1-201ENST00000603845 844 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC068313.1-201ENST00000604028 1008 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC093424.1-201ENST00000604999 338 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC087683.2-201ENST00000611384 326 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC138907.10-201ENST00000623708 983 ntBASIC4.32□□□□□ -1.72
MSH3P20585 AC140479.6-201ENST00000633535 357 ntBASIC4.32□□□□□ -1.72
MSH3P20585 FP325313.1-201ENST00000638228 703 ntBASIC4.32□□□□□ -1.72
MSH3P20585 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
MSH3P20585 AC074029.4-201ENST00000624796 1859 ntBASIC4.32□□□□□ -1.72
MSH3P20585 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
MSH3P20585 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH3P20585 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 SEC63P2-201ENST00000503863 1939 ntBASIC4.31□□□□□ -1.72
MSH3P20585 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 AL355578.1-201ENST00000607405 1328 ntBASIC4.31□□□□□ -1.72
MSH3P20585 ENSAP3-201ENST00000312710 333 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AC067945.1-201ENST00000342609 618 ntBASIC4.31□□□□□ -1.72
MSH3P20585 RNU1-15P-201ENST00000353977 144 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.31□□□□□ -1.72
MSH3P20585 MTND4P3-201ENST00000417829 541 ntBASIC4.31□□□□□ -1.72
MSH3P20585 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 AL139095.3-201ENST00000419672 1203 ntBASIC4.31□□□□□ -1.72
MSH3P20585 EIF1P3-201ENST00000423841 334 ntBASIC4.31□□□□□ -1.72
MSH3P20585 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AL732292.1-201ENST00000426692 226 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AC092634.2-201ENST00000428146 1010 ntBASIC4.31□□□□□ -1.72
MSH3P20585 CEACAMP1-201ENST00000434624 1035 ntBASIC4.31□□□□□ -1.72
MSH3P20585 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 AC092170.1-201ENST00000440211 356 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 CCDC75P1-201ENST00000469247 791 ntBASIC4.31□□□□□ -1.72
MSH3P20585 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 MTCO3P35-201ENST00000485582 781 ntBASIC4.31□□□□□ -1.72
MSH3P20585 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.31□□□□□ -1.72
MSH3P20585 AC008837.1-201ENST00000511513 412 ntBASIC4.31□□□□□ -1.72
MSH3P20585 RNU6-311P-201ENST00000516224 102 ntBASIC4.31□□□□□ -1.72
MSH3P20585 IGLV3-26-201ENST00000520756 302 ntBASIC4.31□□□□□ -1.72
MSH3P20585 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 LRRC34P1-201ENST00000542742 915 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 AC090515.3-201ENST00000560431 315 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.31□□□□□ -1.72
MSH3P20585 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.31□□□□□ -1.72
MSH3P20585 AL021997.2-201ENST00000615674 271 ntBASIC4.31□□□□□ -1.72
MSH3P20585 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.31□□□□□ -1.72
MSH3P20585 AC006386.1-201ENST00000619436 415 ntBASIC4.31□□□□□ -1.72
MSH3P20585 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.31□□□□□ -1.72
MSH3P20585 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
MSH3P20585 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
MSH3P20585 AC068254.2-201ENST00000623938 3577 ntBASIC4.31□□□□□ -1.72
MSH3P20585 AL356489.2-201ENST00000566968 3528 ntBASIC4.31□□□□□ -1.72
MSH3P20585 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH3P20585 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.31□□□□□ -1.72
MSH3P20585 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
MSH3P20585 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.31□□□□□ -1.72
MSH3P20585 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH3P20585 MFSD8-220ENST00000641243 1422 ntBASIC4.3□□□□□ -1.72
MSH3P20585 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH3P20585 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.3□□□□□ -1.72
MSH3P20585 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.3□□□□□ -1.72
MSH3P20585 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
MSH3P20585 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.3□□□□□ -1.72
MSH3P20585 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH3P20585 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH3P20585 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
MSH3P20585 MIR448-201ENST00000362131 111 ntBASIC4.3□□□□□ -1.72
MSH3P20585 RNA5SP509-201ENST00000364577 119 ntBASIC4.3□□□□□ -1.72
MSH3P20585 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
MSH3P20585 RNU6-906P-201ENST00000384700 70 ntBASIC4.3□□□□□ -1.72
MSH3P20585 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms