Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4BO75351 AL589765.3-201ENST00000446084 462 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 BTF3P6-201ENST00000448054 499 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4BO75351 NDUFA12P1-201ENST00000455914 406 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 AC010307.1-201ENST00000467206 836 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 AC104689.1-201ENST00000473356 768 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 RN7SL481P-201ENST00000477764 299 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4BO75351 AC097173.1-201ENST00000505862 819 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 HMGB3P16-201ENST00000508037 287 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 ATP1B1P1-201ENST00000509767 915 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS4BO75351 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4BO75351 AC012400.1-201ENST00000518452 381 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 OR5AK1P-201ENST00000524837 922 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS4BO75351 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 AC092490.3-201ENST00000545370 572 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 TRAV15-201ENST00000556680 249 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 RN7SL435P-201ENST00000584418 282 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 AC008759.1-201ENST00000589783 983 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
VPS4BO75351 AC243654.2-201ENST00000612843 443 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 AL031667.3-201ENST00000620124 655 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS4BO75351 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 AC092656.1-203ENST00000624134 423 ntBASIC5.01□□□□□ -1.61
VPS4BO75351 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS4BO75351 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
VPS4BO75351 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4BO75351 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
VPS4BO75351 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 UQCRC2P1-201ENST00000417777 1332 ntBASIC5□□□□□ -1.61
VPS4BO75351 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5□□□□□ -1.61
VPS4BO75351 RNA5SP90-201ENST00000364801 99 ntBASIC5□□□□□ -1.61
VPS4BO75351 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 Y_RNA.553-201ENST00000384670 102 ntBASIC5□□□□□ -1.61
VPS4BO75351 RNA5SP339-201ENST00000390987 122 ntBASIC5□□□□□ -1.61
VPS4BO75351 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 RPL23AP47-201ENST00000408017 460 ntBASIC5□□□□□ -1.61
VPS4BO75351 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5□□□□□ -1.61
VPS4BO75351 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5□□□□□ -1.61
VPS4BO75351 AC093655.2-201ENST00000425735 631 ntBASIC5□□□□□ -1.61
VPS4BO75351 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 MTND1P34-201ENST00000438556 671 ntBASIC5□□□□□ -1.61
VPS4BO75351 RPS29P10-201ENST00000439197 166 ntBASIC5□□□□□ -1.61
VPS4BO75351 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5□□□□□ -1.61
VPS4BO75351 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 RPL7AP10-201ENST00000481016 791 ntBASIC5□□□□□ -1.61
VPS4BO75351 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5□□□□□ -1.61
VPS4BO75351 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5□□□□□ -1.61
VPS4BO75351 AC011352.3-201ENST00000505162 593 ntBASIC5□□□□□ -1.61
VPS4BO75351 RNU6-513P-201ENST00000516104 104 ntBASIC5□□□□□ -1.61
VPS4BO75351 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5□□□□□ -1.61
VPS4BO75351 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 AP001189.2-201ENST00000527320 189 ntBASIC5□□□□□ -1.61
VPS4BO75351 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5□□□□□ -1.61
VPS4BO75351 OR11J2P-201ENST00000555298 907 ntBASIC5□□□□□ -1.61
VPS4BO75351 NDUFB4P11-201ENST00000560510 395 ntBASIC5□□□□□ -1.61
VPS4BO75351 AC068790.6-201ENST00000602558 258 ntBASIC5□□□□□ -1.61
VPS4BO75351 AC103591.3-201ENST00000608684 209 ntBASIC5□□□□□ -1.61
VPS4BO75351 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5□□□□□ -1.61
VPS4BO75351 AC008443.7-201ENST00000622195 246 ntBASIC5□□□□□ -1.61
VPS4BO75351 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5□□□□□ -1.61
VPS4BO75351 AC135068.12-201ENST00000637370 931 ntBASIC5□□□□□ -1.61
VPS4BO75351 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC5□□□□□ -1.61
VPS4BO75351 AC099063.3-201ENST00000642066 185 ntBASIC5□□□□□ -1.61
VPS4BO75351 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5□□□□□ -1.61
VPS4BO75351 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS4BO75351 AC092747.4-201ENST00000620519 1861 ntBASIC5□□□□□ -1.61
VPS4BO75351 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
VPS4BO75351 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS4BO75351 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms