Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A1P12109 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A1P12109 RNA5SP479-201ENST00000364858 117 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC019155.1-201ENST00000382242 574 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 RPS3AP24-201ENST00000407896 734 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 TPT1P2-201ENST00000413105 503 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 VTA1P1-201ENST00000414044 866 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A1P12109 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 ZNF114P1-201ENST00000453500 292 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 UBA52P3-201ENST00000491303 382 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AC138853.1-201ENST00000503549 823 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 GLUD1P3-202ENST00000508551 200 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC091912.1-201ENST00000511351 248 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AP003392.2-201ENST00000527269 208 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AP001317.1-201ENST00000531194 960 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC012417.1-201ENST00000582307 1039 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC091805.2-201ENST00000603848 235 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AC025594.3-201ENST00000613068 790 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AL136981.2-201ENST00000617319 734 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 AF001550.2-201ENST00000636643 217 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC5.75□□□□□ -1.49
COL6A1P12109 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 AC104118.1-201ENST00000607625 1589 ntBASIC5.75□□□□□ -1.49
COL6A1P12109 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL6A1P12109 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.75□□□□□ -1.49
COL6A1P12109 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL6A1P12109 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A1P12109 DDX18P3-201ENST00000404856 2007 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 Y_RNA.41-201ENST00000362646 102 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 Y_RNA.248-201ENST00000364501 109 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 SNORD56.6-201ENST00000384569 71 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 MIR525-201ENST00000384978 85 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 RN7SKP33-201ENST00000410942 340 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 EIF4A1P3-201ENST00000411521 244 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 TPMTP3-201ENST00000411928 735 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 MTND1P21-201ENST00000412991 285 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC5.74□□□□□ -1.49
COL6A1P12109 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A1P12109 USP9YP22-201ENST00000438971 294 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 RPS29P10-201ENST00000439197 166 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A1P12109 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 RPL36AP33-201ENST00000450395 310 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 SNRPGP9-201ENST00000456025 225 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC027673.1-201ENST00000456245 405 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A1P12109 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 MRPS33P2-201ENST00000507850 322 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC111000.3-201ENST00000508057 576 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC009643.1-201ENST00000532030 391 ntBASIC5.74□□□□□ -1.49
COL6A1P12109 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.74□□□□□ -1.49
COL6A1P12109 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL6A1P12109 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC5.74□□□□□ -1.49
COL6A1P12109 MTND1P15-201ENST00000579262 949 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms