Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.33□□□□□ -1.56
USP39Q53GS9 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.33□□□□□ -1.56
USP39Q53GS9 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
USP39Q53GS9 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.33□□□□□ -1.56
USP39Q53GS9 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 SNURFL-201ENST00000309296 343 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.33□□□□□ -1.56
USP39Q53GS9 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 RN7SKP104-201ENST00000362605 328 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 RNU4-76P-201ENST00000364509 141 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 RNU6-259P-201ENST00000383999 107 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 SNORA5.1-201ENST00000384275 131 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 MIR141-201ENST00000384975 95 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 RNA5SP105-201ENST00000391123 113 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC093719.1-202ENST00000392735 373 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 OR6C69P-201ENST00000394268 893 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 AL078599.1-201ENST00000402075 293 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 RPSAP35-201ENST00000413753 818 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC5.33□□□□□ -1.56
USP39Q53GS9 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.33□□□□□ -1.56
USP39Q53GS9 OR51A5P-201ENST00000415429 942 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 VTI1BP4-201ENST00000427516 527 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.33□□□□□ -1.56
USP39Q53GS9 RPL21P133-201ENST00000443666 476 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 NANOGNBP1-201ENST00000448444 480 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 RPL36AP33-201ENST00000450395 310 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 AC092647.2-201ENST00000452998 253 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 CDC42P1-201ENST00000456658 548 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.33□□□□□ -1.56
USP39Q53GS9 RN7SL738P-201ENST00000470264 297 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC097484.1-201ENST00000471148 389 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 AC091912.1-201ENST00000511351 248 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 TCP11X3P-202ENST00000514289 1254 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 RN7SKP141-201ENST00000516167 338 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 RNU6-506P-201ENST00000516553 94 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.33□□□□□ -1.56
USP39Q53GS9 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.33□□□□□ -1.56
USP39Q53GS9 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 AP002373.2-201ENST00000541631 1060 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 GLYCAM1-201ENST00000546596 285 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 CENPUP2-201ENST00000555897 1186 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC5.33□□□□□ -1.56
USP39Q53GS9 CYP2C60P-201ENST00000566088 139 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 MIR3912-201ENST00000577566 105 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 MIR7853-201ENST00000584820 132 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.33□□□□□ -1.56
USP39Q53GS9 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 BNIP3P26-201ENST00000600827 554 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC068790.7-201ENST00000602347 528 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 BMS1P7-201ENST00000602440 1052 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC015871.2-201ENST00000603605 948 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC006566.1-201ENST00000608943 513 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC012414.7-202ENST00000622705 1090 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 DUXAP9-208ENST00000622815 614 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AC099654.5-201ENST00000636479 350 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 AP005901.5-201ENST00000545779 1796 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP39Q53GS9 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
USP39Q53GS9 ELF2P3-201ENST00000445099 1506 ntBASIC5.33□□□□□ -1.56
USP39Q53GS9 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
USP39Q53GS9 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP39Q53GS9 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.32□□□□□ -1.56
USP39Q53GS9 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP39Q53GS9 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP39Q53GS9 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP39Q53GS9 SNORA72.1-201ENST00000363485 129 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 RNU6-348P-201ENST00000384386 107 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 RNY3P10-201ENST00000384764 102 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.32□□□□□ -1.56
USP39Q53GS9 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.32□□□□□ -1.56
USP39Q53GS9 MIR1277-201ENST00000408536 78 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 GJA6P-201ENST00000415117 1042 ntBASIC5.32□□□□□ -1.56
USP39Q53GS9 AC245054.1-201ENST00000420944 258 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms