Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RN7SL542P-201ENST00000467147 294 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 ACTR3P3-201ENST00000480448 893 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXF1Q12946 HMGN1P11-201ENST00000508668 303 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXF1Q12946 AC018442.3-201ENST00000523025 183 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AL121766.1-201ENST00000547436 487 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.33□□□□□ -1.88
FOXF1Q12946 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.33□□□□□ -1.88
FOXF1Q12946 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXF1Q12946 AC009101.1-201ENST00000568135 242 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 VN1R81P-201ENST00000602085 372 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AL034351.1-201ENST00000605288 668 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXF1Q12946 AL121772.2-201ENST00000614331 297 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AL161637.1-201ENST00000622380 412 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AL356863.1-201ENST00000623378 1080 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AP003400.2-201ENST00000624036 666 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 AC119674.1-207ENST00000641355 633 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
FOXF1Q12946 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.33□□□□□ -1.88
FOXF1Q12946 MFSD8-236ENST00000641509 4050 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 Z73965.1-201ENST00000623412 2297 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXF1Q12946 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXF1Q12946 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
FOXF1Q12946 AC134882.1-201ENST00000603738 1676 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 ASNSP1-204ENST00000641977 1664 ntBASIC3.33□□□□□ -1.88
FOXF1Q12946 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.33□□□□□ -1.88
FOXF1Q12946 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
FOXF1Q12946 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXF1Q12946 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXF1Q12946 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXF1Q12946 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXF1Q12946 AL691447.1-201ENST00000419456 387 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 RPL21P109-201ENST00000422213 475 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 RAB9AP5-201ENST00000437794 597 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC122718.1-201ENST00000439448 744 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXF1Q12946 RAB9AP2-201ENST00000443911 597 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 FAM133DP-201ENST00000464802 691 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC022034.3-201ENST00000471393 478 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXF1Q12946 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXF1Q12946 RN7SKP83-201ENST00000516512 178 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC023632.4-201ENST00000517783 191 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 IGKV2D-23-201ENST00000518179 286 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 VTA1P2-201ENST00000520205 911 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC025423.2-201ENST00000537570 439 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC023161.2-201ENST00000551218 780 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.32□□□□□ -1.88
FOXF1Q12946 GTF2IP22-201ENST00000554443 182 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.32□□□□□ -1.88
FOXF1Q12946 AC234775.3-201ENST00000564612 656 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.32□□□□□ -1.88
FOXF1Q12946 AC006130.2-201ENST00000586202 326 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 AC112230.1-201ENST00000604342 547 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 Z82195.1-201ENST00000604558 398 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 AC005972.3-201ENST00000606304 481 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 AC009950.2-201ENST00000636548 183 ntBASIC3.32□□□□□ -1.88
FOXF1Q12946 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXF1Q12946 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
FOXF1Q12946 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXF1Q12946 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXF1Q12946 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
FOXF1Q12946 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXF1Q12946 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
FOXF1Q12946 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXF1Q12946 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXF1Q12946 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXF1Q12946 AC007685.1-201ENST00000329806 452 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 OR13C3-201ENST00000374781 1108 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 MIR134-201ENST00000385258 73 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
FOXF1Q12946 RPL30P2-201ENST00000414021 291 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXF1Q12946 AL035423.1-201ENST00000420331 213 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 MOB1AP1-201ENST00000430903 535 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXF1Q12946 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXF1Q12946 AC007389.2-201ENST00000434630 306 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXF1Q12946 MTND4LP12-201ENST00000448237 295 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 AC010655.1-201ENST00000449336 292 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXF1Q12946 AC006511.1-201ENST00000470614 315 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 CDH12P2-201ENST00000504393 298 ntBASIC3.31□□□□□ -1.88
FOXF1Q12946 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXF1Q12946 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXF1Q12946 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms