Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR184-201ENST00000384962 84 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.48□□□□□ -1.85
FOXA1P55317 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA1P55317 RWDD4P2-201ENST00000426392 563 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 AL121578.1-201ENST00000428051 892 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA1P55317 MTCO3P17-201ENST00000443775 513 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA1P55317 ANP32BP2-201ENST00000454525 545 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 RWDD4P1-201ENST00000488019 565 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 AC026784.1-201ENST00000507986 352 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA1P55317 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
FOXA1P55317 NDUFB9P3-201ENST00000521269 501 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.48□□□□□ -1.85
FOXA1P55317 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA1P55317 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.48□□□□□ -1.85
FOXA1P55317 MIR5187-201ENST00000583479 76 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 SNORA35B-201ENST00000607417 129 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 U7.8-201ENST00000619968 63 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 AC068724.3-201ENST00000625906 87 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA1P55317 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA1P55317 AC134882.1-201ENST00000603738 1676 ntBASIC3.48□□□□□ -1.85
FOXA1P55317 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA1P55317 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA1P55317 AP004289.2-201ENST00000444413 1457 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 AC095050.2-201ENST00000510748 1458 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
FOXA1P55317 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA1P55317 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.47□□□□□ -1.85
FOXA1P55317 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA1P55317 MFSD8-220ENST00000641243 1422 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.47□□□□□ -1.85
FOXA1P55317 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 RNU6-1331P-201ENST00000363658 106 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 RNU6-1263P-201ENST00000384601 106 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 MIR3074-201ENST00000384885 81 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 U3.39-201ENST00000408569 239 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 MIR1183-201ENST00000408856 89 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 AC098592.2-201ENST00000413158 265 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
FOXA1P55317 AC017079.2-201ENST00000416102 485 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 VN1R31P-201ENST00000417498 730 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA1P55317 AL158071.1-201ENST00000430315 461 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 RAB9AP5-201ENST00000437794 597 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 AP000936.3-201ENST00000438127 255 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 RPS29P7-201ENST00000439662 171 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 RAB9AP2-201ENST00000443911 597 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA1P55317 AC010655.1-201ENST00000449336 292 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 EIF2S2P4-201ENST00000461070 984 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 RPS20P21-201ENST00000466859 343 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 RPL23AP12-201ENST00000467573 473 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA1P55317 GAPDHP36-201ENST00000480688 918 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC3.47□□□□□ -1.85
FOXA1P55317 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.47□□□□□ -1.85
FOXA1P55317 AC026402.1-201ENST00000513642 170 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.47□□□□□ -1.85
FOXA1P55317 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.47□□□□□ -1.85
FOXA1P55317 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA1P55317 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA1P55317 AC092653.1-201ENST00000608509 531 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 AC022149.2-201ENST00000621061 203 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.47□□□□□ -1.85
FOXA1P55317 AC119674.1-207ENST00000641355 633 ntBASIC3.47□□□□□ -1.85
FOXA1P55317 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.47□□□□□ -1.85
FOXA1P55317 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.47□□□□□ -1.85
FOXA1P55317 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
FOXA1P55317 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
FOXA1P55317 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA1P55317 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA1P55317 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA1P55317 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA1P55317 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA1P55317 MIR1193-201ENST00000408109 78 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA1P55317 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA1P55317 AC093698.1-201ENST00000423843 571 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 OSTCP5-201ENST00000425293 453 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA1P55317 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA1P55317 AC020898.1-201ENST00000474167 787 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA1P55317 AC113398.2-201ENST00000507630 558 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA1P55317 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA1P55317 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 RNU4-18P-201ENST00000516751 149 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 RNU6-579P-201ENST00000516879 102 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms