Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC093698.1-201ENST00000423843 571 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC093655.2-201ENST00000425735 631 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RBMY2QP-201ENST00000429799 1147 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 PRELID3BP10-201ENST00000431957 584 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 UBE2V1P3-201ENST00000439651 417 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 MTCO2P3-201ENST00000442543 421 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXD3P31249 COX6CP12-201ENST00000446748 202 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD3P31249 PTMAP3-201ENST00000447474 330 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC099560.2-201ENST00000457554 255 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC116337.2-201ENST00000477662 156 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 BX284632.1-201ENST00000478218 541 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RPL21P6-201ENST00000479171 504 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC011825.1-201ENST00000484967 388 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 OR4G11P-201ENST00000492842 939 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 SNRPCP2-201ENST00000504370 475 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC090071.1-201ENST00000507713 644 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC109458.1-201ENST00000508858 316 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RNU6-202P-201ENST00000515998 96 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RNU6-720P-201ENST00000516363 108 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXD3P31249 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 AP001922.4-201ENST00000526967 290 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXD3P31249 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXD3P31249 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC020914.6-201ENST00000594327 272 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC090181.2-201ENST00000602975 672 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC009237.13-201ENST00000603193 276 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC087752.4-201ENST00000605911 462 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC244107.2-201ENST00000611773 76 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC243654.2-201ENST00000612843 443 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 MIR7844-201ENST00000616161 122 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC116563.2-201ENST00000624751 535 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 AC120349.2-201ENST00000625002 298 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 OR2L1P-202ENST00000641567 1023 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 HSPA8P18-201ENST00000439846 1928 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 CDR1-202ENST00000625883 1485 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXD3P31249 AC083899.1-201ENST00000454465 3819 ntBASIC4.1□□□□□ -1.75
HOXD3P31249 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXD3P31249 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXD3P31249 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXD3P31249 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXD3P31249 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXD3P31249 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD3P31249 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.09□□□□□ -1.75
HOXD3P31249 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD3P31249 RNU6-433P-201ENST00000363216 104 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 RNU6-1119P-201ENST00000384349 108 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AL512430.2-201ENST00000406786 339 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 U3.36-201ENST00000408418 213 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC211486.3-201ENST00000412694 621 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXD3P31249 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD3P31249 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXD3P31249 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXD3P31249 RPS26P40-201ENST00000435209 294 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AL512286.1-201ENST00000439244 400 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AL450263.2-201ENST00000439400 589 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXD3P31249 CDC27P1-201ENST00000445384 715 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 ST13P20-201ENST00000447996 1065 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 AC104634.1-201ENST00000452720 462 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 MTCO3P11-201ENST00000455103 774 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 RPL18AP17-201ENST00000455326 198 ntBASIC4.09□□□□□ -1.75
HOXD3P31249 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXD3P31249 RPL37P3-201ENST00000456825 293 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms