Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 AC018618.2-201ENST00000604770 446 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 OR6R2P-201ENST00000609216 300 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 MIR492-201ENST00000638676 116 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 AL163152.1-201ENST00000642001 374 ntBASIC4.14□□□□□ -1.75
VPS35Q96QK1 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.14□□□□□ -1.75
VPS35Q96QK1 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS35Q96QK1 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS35Q96QK1 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
VPS35Q96QK1 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS35Q96QK1 RNU6-252P-201ENST00000363232 107 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS35Q96QK1 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 SNORA70C-201ENST00000384538 135 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 ZNF603P-201ENST00000405613 487 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 MTND2P11-201ENST00000423638 648 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 RSL24D1P6-201ENST00000426934 401 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 HLA-N-201ENST00000437516 135 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 MTCYBP21-201ENST00000443300 1113 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC069540.1-201ENST00000446320 988 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 RPL7P31-201ENST00000450192 724 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 RPL36AP13-201ENST00000457490 317 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC108729.2-201ENST00000476543 840 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AL161747.1-201ENST00000480068 358 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AF213884.1-201ENST00000488102 463 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC106872.2-201ENST00000494303 480 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC006499.6-201ENST00000511169 607 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 OR4U1P-201ENST00000554958 912 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC025884.1-201ENST00000556034 378 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 PARP1P2-201ENST00000556806 195 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC022655.2-201ENST00000577280 318 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC020914.4-201ENST00000597690 277 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC079610.2-201ENST00000604818 690 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 MIR432-201ENST00000606207 94 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC107308.1-201ENST00000615897 301 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 MIR1264-201ENST00000616374 69 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.13□□□□□ -1.75
VPS35Q96QK1 AC000123.2-201ENST00000623124 461 ntBASIC4.13□□□□□ -1.75
VPS35Q96QK1 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
VPS35Q96QK1 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
VPS35Q96QK1 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS35Q96QK1 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS35Q96QK1 RN7SKP44-201ENST00000363602 316 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 RNU6-1279P-201ENST00000383917 103 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 RPS26P8-201ENST00000393490 348 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 TCEA1P4-201ENST00000415066 844 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 RPL30P3-201ENST00000424262 333 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 RPL7P19-201ENST00000469948 618 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 RN7SL860P-201ENST00000473738 223 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 RN7SL604P-201ENST00000492589 296 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 SNORA31.9-201ENST00000516429 84 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 IGHV3-32-201ENST00000519182 355 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 CIR1P1-201ENST00000524055 1133 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 LINC00557-201ENST00000563184 1279 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 CYP4A43P-201ENST00000568156 121 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 RN7SL600P-201ENST00000581811 299 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 PCNAP1-202ENST00000595299 752 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 AC010857.1-201ENST00000606398 594 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 AL031666.3-201ENST00000609320 1006 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 MIR7151-201ENST00000617477 60 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 AC090506.2-201ENST00000624521 419 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 AP005264.7-201ENST00000625003 745 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 FRG1DP-201ENST00000635586 771 ntBASIC4.12□□□□□ -1.75
VPS35Q96QK1 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS35Q96QK1 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS35Q96QK1 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms