Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL445363.3-201ENST00000623080 671 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 AC090617.9-201ENST00000623751 147 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 HPVC1-201ENST00000629899 1198 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 MTND5P3-201ENST00000438536 1800 ntBASIC4.22□□□□□ -1.73
VPS39Q96JC1 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS39Q96JC1 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS39Q96JC1 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
VPS39Q96JC1 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
VPS39Q96JC1 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.21□□□□□ -1.73
VPS39Q96JC1 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.21□□□□□ -1.73
VPS39Q96JC1 MAPK10-373ENST00000641983 6772 ntBASIC4.21□□□□□ -1.73
VPS39Q96JC1 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 ZNF962P-201ENST00000443465 3140 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 RNU6-1293P-201ENST00000384077 107 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 RNA5SP332-201ENST00000391063 115 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 RAC1P3-201ENST00000416129 580 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 CR848007.2-201ENST00000424918 787 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AL353748.1-201ENST00000440753 474 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 RN7SL98P-201ENST00000462271 300 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 RPS29P19-201ENST00000479709 171 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AK3P4-201ENST00000504283 583 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 RPL7L1P13-201ENST00000511702 739 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 MTND2P31-201ENST00000512602 616 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 MTND2P26-201ENST00000528255 1029 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 OR6C73P-201ENST00000546432 358 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC063950.1-201ENST00000552036 308 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 AL731537.2-201ENST00000561565 951 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC104785.1-201ENST00000603220 588 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC025946.2-201ENST00000603398 234 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 AC012603.1-201ENST00000606424 528 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS39Q96JC1 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 RNU6-156P-201ENST00000621869 107 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 U6.107-201ENST00000637108 79 ntBASIC4.21□□□□□ -1.74
VPS39Q96JC1 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS39Q96JC1 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 NSRP1P1-201ENST00000444067 1693 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS39Q96JC1 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS39Q96JC1 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS39Q96JC1 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 P2RY10P2-201ENST00000416730 913 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 MFSD13B-201ENST00000420133 1290 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 CYP4F29P-201ENST00000420685 446 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 EIF2S2P3-201ENST00000428356 999 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 RN7SL205P-201ENST00000490174 284 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC093755.1-201ENST00000512950 1023 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 MTCO1P30-201ENST00000515244 580 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 AL139395.1-201ENST00000603662 160 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 RN7SL722P-201ENST00000617780 284 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 RN7SL565P-201ENST00000618246 284 ntBASIC4.2□□□□□ -1.74
VPS39Q96JC1 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
VPS39Q96JC1 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS39Q96JC1 AP001486.2-201ENST00000561652 5113 ntBASIC4.19□□□□□ -1.74
VPS39Q96JC1 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS39Q96JC1 MFSD8-216ENST00000641147 4009 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms