Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Gm28510-201ENSMUST00000190572 928 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Gm43416-201ENSMUST00000201916 1015 ntBASIC14.45□□□□□ -0.1
Nubp1Q9R060 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14.45□□□□□ -0.1
Nubp1Q9R060 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Nubp1Q9R060 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Tgds-204ENSMUST00000228543 1594 ntBASIC14.44□□□□□ -0.1
Nubp1Q9R060 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Gm11336-201ENSMUST00000118168 334 ntBASIC14.44□□□□□ -0.1
Nubp1Q9R060 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC14.44□□□□□ -0.1
Nubp1Q9R060 Gm44136-201ENSMUST00000203819 1106 ntBASIC14.44□□□□□ -0.1
Nubp1Q9R060 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC14.44□□□□□ -0.1
Nubp1Q9R060 Gm9519-201ENSMUST00000206108 1337 ntBASIC14.43□□□□□ -0.1
Nubp1Q9R060 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.43□□□□□ -0.1
Nubp1Q9R060 Gm13312-201ENSMUST00000119631 718 ntBASIC14.43□□□□□ -0.1
Nubp1Q9R060 Gm14363-201ENSMUST00000122304 409 ntBASIC14.43□□□□□ -0.1
Nubp1Q9R060 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Gm17872-201ENSMUST00000222550 532 ntBASIC14.43□□□□□ -0.1
Nubp1Q9R060 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Nubp1Q9R060 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Gm5828-201ENSMUST00000071842 1860 ntBASIC14.42□□□□□ -0.1
Nubp1Q9R060 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Gm28707-201ENSMUST00000186134 558 ntTSL 3 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 AC124742.1-201ENSMUST00000219909 547 ntTSL 3 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Nubp1Q9R060 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms