Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Cdc40Q9DC48 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Gm18958-201ENSMUST00000174258 762 ntBASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Mir1668-201ENSMUST00000184114 107 ntBASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
Cdc40Q9DC48 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Cdc40Q9DC48 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
Cdc40Q9DC48 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Cdc40Q9DC48 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Gm9013-201ENSMUST00000132939 882 ntBASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Gm5587-201ENSMUST00000206270 674 ntBASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdc40Q9DC48 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms