Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Gm9013-201ENSMUST00000132939 882 ntBASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ushbp1Q8R370 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ushbp1Q8R370 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Ushbp1Q8R370 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ushbp1Q8R370 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ushbp1Q8R370 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Ushbp1Q8R370 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ushbp1Q8R370 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Ushbp1Q8R370 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Ushbp1Q8R370 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Gm17808-201ENSMUST00000200859 894 ntBASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ushbp1Q8R370 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Mir1668-201ENSMUST00000184114 107 ntBASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ushbp1Q8R370 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ushbp1Q8R370 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms