Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ccdc38Q8CDN8 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Dancr-204ENSMUST00000132389 2347 ntBASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Gm11539-201ENSMUST00000119837 557 ntBASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ccdc38Q8CDN8 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ccdc38Q8CDN8 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Actl10-202ENSMUST00000226583 1501 ntBASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Phf7-203ENSMUST00000226565 1971 ntBASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ccdc38Q8CDN8 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Gm30025-201ENSMUST00000218555 728 ntBASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ccdc38Q8CDN8 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms