Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Spsb2-203ENSMUST00000112473 1322 ntBASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Vps53Q8CCB4 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Vps53Q8CCB4 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps53Q8CCB4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Gm29518-201ENSMUST00000190858 372 ntBASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps53Q8CCB4 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vps53Q8CCB4 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Gm17807-201ENSMUST00000186869 298 ntBASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vps53Q8CCB4 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vps53Q8CCB4 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms